Literature DB >> 17620718

Crystallization, diffraction data collection and preliminary crystallographic analysis of DING protein from Pseudomonas fluorescens.

Sebastien Moniot1, Mikael Elias, Donghyo Kim, Ken Scott, Eric Chabriere.   

Abstract

PfluDING is a phosphate-binding protein expressed in Pseudomonas fluorescens. This protein is clearly distinct from the bacterial ABC transporter soluble phosphate-binding protein PstS and is more homologous to eukaryotic DING proteins. Interestingly, bacterial DING proteins have only been detected in certain Pseudomonas species. Although DING proteins seem to be ubiquitous in eukaryotes, they are systematically absent from eukaryotic genomic databases and thus are still quite mysterious and poorly characterized. PfluDING displays mitogenic activity towards human cells and binds various ligands such as inorganic phosphate, pyrophosphate, nucleotide triphosphates and cotinine. Here, the crystallization of PfluDING is reported in a monoclinic space group (P2(1)), with typical unit-cell parameters a = 36.7, b = 123.7, c = 40.8 A, alpha = 90, beta = 116.7, gamma = 90 degrees. Preliminary crystallographic analysis reveals good diffraction quality for these crystals and a 1.43 A resolution data set has been collected.

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Year:  2007        PMID: 17620718      PMCID: PMC2335140          DOI: 10.1107/S1744309107028102

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

1.  Crystal structure of M tuberculosis ABC phosphate transport receptor: specificity and charge compensation dominated by ion-dipole interactions.

Authors:  Nand K Vyas; Meenakshi N Vyas; Florante A Quiocho
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

2.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

3.  Purification and identification of cutinases from Colletotrichum kahawae and Colletotrichum gloeosporioides.

Authors:  Zhenjia Chen; Catarina F Franco; Ricardo P Baptista; Joaquim M S Cabral; Ana V Coelho; Carlos J Rodrigues; Eduardo P Melo
Journal:  Appl Microbiol Biotechnol       Date:  2006-10-17       Impact factor: 4.813

4.  Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein.

Authors:  Renaud Morales; Anne Berna; Philippe Carpentier; Carlos Contreras-Martel; Frédérique Renault; Murielle Nicodeme; Marie-Laure Chesne-Seck; François Bernier; Jérôme Dupuy; Christine Schaeffer; Hélène Diemer; Alain Van-Dorsselaer; Juan C Fontecilla-Camps; Patrick Masson; Daniel Rochu; Eric Chabriere
Journal:  Structure       Date:  2006-03       Impact factor: 5.006

5.  Isolation and microsequencing of a novel cotinine receptor.

Authors:  O Riah; J C Dousset; E Bofill-Cardona; P Courrière
Journal:  Cell Mol Neurobiol       Date:  2000-12       Impact factor: 5.046

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  High specificity of a phosphate transport protein determined by hydrogen bonds.

Authors:  H Luecke; F A Quiocho
Journal:  Nature       Date:  1990-09-27       Impact factor: 49.962

8.  Avian air sac and plasma proteins that bind surface polysaccharides of Escherichia coli O2.

Authors:  W K Weebadda; G J Hoover; D B Hunter; M A Hayes
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2001-10       Impact factor: 2.231

Review 9.  DING, a genistein target in human breast cancer: a protein without a gene.

Authors:  Michael Belenky; Jeevan Prasain; Helen Kim; Stephen Barnes
Journal:  J Nutr       Date:  2003-07       Impact factor: 4.798

10.  Renal epithelial cells constitutively produce a protein that blocks adhesion of crystals to their surface.

Authors:  Vivek Kumar; Shihui Yu; Gerard Farell; F Gary Toback; John C Lieske
Journal:  Am J Physiol Renal Physiol       Date:  2004-04-20
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  12 in total

Review 1.  For whom the bell tolls? DING proteins in health and disease.

Authors:  Anne Berna; François Bernier; Eric Chabrière; Mikael Elias; Ken Scott; Andrew Suh
Journal:  Cell Mol Life Sci       Date:  2009-03-17       Impact factor: 9.261

2.  Growth inhibition of malignant glioblastoma by DING protein.

Authors:  Markus J Bookland; Nune Darbinian; Michael Weaver; Shohreh Amini; Kamel Khalili
Journal:  J Neurooncol       Date:  2011-11-04       Impact factor: 4.130

3.  Crystallization and preliminary X-ray diffraction analysis of a DING protein from Pseudomonas aeruginosa PA14.

Authors:  Ahmed Djeghader; Guillaume Gotthard; Andrew Suh; Daniel Gonzalez; Ken Scott; Mikael Elias; Eric Chabriere
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-03-28

4.  Phosphate-binding protein from Polaromonas JS666: purification, characterization, crystallization and sulfur SAD phasing.

Authors:  Vanessa R Pegos; Louis Hey; Jacob LaMirande; Rachel Pfeffer; Rosalie Lipsh; Moshe Amitay; Daniel Gonzalez; Mikael Elias
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-05-25       Impact factor: 1.056

5.  Evidence for phosphatase activity of p27SJ and its impact on the cell cycle.

Authors:  Nune Darbinian; Marta Czernik; Armine Darbinyan; Mikael Elias; Eric Chabriere; Surekha Bonasu; Kamel Khalili; Shohreh Amini
Journal:  J Cell Biochem       Date:  2009-06-01       Impact factor: 4.429

6.  Crystallization and preliminary X-ray diffraction analysis of a high-affinity phosphate-binding protein endowed with phosphatase activity from Pseudomonas aeruginosa PAO1.

Authors:  Ahmed Djeghader; Guillaume Gotthard; Andrew Suh; Daniel Gonzalez; Ken Scott; Eric Chabriere; Mikael Elias
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

7.  p38SJ, a novel DINGG protein protects neuronal cells from alcohol induced injury and death.

Authors:  Shohreh Amini; Nana Merabova; Kamel Khalili; Nune Darbinian
Journal:  J Cell Physiol       Date:  2009-12       Impact factor: 6.384

8.  Creation of a bi-directional protein transduction system for suppression of HIV-1 expression by p27SJ.

Authors:  Nune Darbinian; Yuri Popov; Kamel Khalili; Shohreh Amini
Journal:  Antiviral Res       Date:  2007-12-26       Impact factor: 5.970

9.  Identification of X-DING-CD4, a new member of human DING protein family that is secreted by HIV-1 resistant CD4(+) T cells and has anti-viral activity.

Authors:  Adam Lesner; Rasheda Shilpi; Anna Ivanova; Mary Ann Gawinowicz; Jacob Lesniak; Dimitar Nikolov; Malgorzata Simm
Journal:  Biochem Biophys Res Commun       Date:  2009-08-29       Impact factor: 3.575

10.  Eukaryotic DING proteins are endogenous: an immunohistological study in mouse tissues.

Authors:  Jean-Marc Collombet; Mikael Elias; Guillaume Gotthard; Elise Four; Frédérique Renault; Aurélie Joffre; Dominique Baubichon; Daniel Rochu; Eric Chabrière
Journal:  PLoS One       Date:  2010-02-08       Impact factor: 3.240

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