Literature DB >> 17620716

Purification, crystallization and preliminary X-ray analysis of the HsdR subunit of the EcoR124I endonuclease from Escherichia coli.

Mikalai Lapkouski1, Santosh Panjikar, Ivana Kuta Smatanova, Eva Csefalvay.   

Abstract

EcoR124I is a multicomplex enzyme belonging to the type I restriction-modification system from Escherichia coli. Although EcoR124I has been extensively characterized biochemically, there is no direct structural information available about particular subunits. HsdR is a motor subunit that is responsible for ATP hydrolysis, DNA translocation and cleavage of the DNA substrate recognized by the complex. Recombinant HsdR subunit was crystallized using the sitting-drop vapour-diffusion method. Crystals belong to the primitive monoclinic space group, with unit-cell parameters a = 85.75, b = 124.71, c = 128.37 A, beta = 108.14 degrees. Native data were collected to 2.6 A resolution at the X12 beamline of EMBL Hamburg.

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Year:  2007        PMID: 17620716      PMCID: PMC2335136          DOI: 10.1107/S174430910702622X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

1.  DNA supercoiling during ATP-dependent DNA translocation by the type I restriction enzyme EcoAI.

Authors:  P Janscak; T A Bickle
Journal:  J Mol Biol       Date:  2000-01-28       Impact factor: 5.469

Review 2.  Nucleoside triphosphate-dependent restriction enzymes.

Authors:  D T Dryden; N E Murray; D N Rao
Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

3.  When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I.

Authors:  Louise K Stanley; Ralf Seidel; Carsten van der Scheer; Nynke H Dekker; Mark D Szczelkun; Cees Dekker
Journal:  EMBO J       Date:  2006-04-27       Impact factor: 11.598

4.  Endonuclease (R) subunits of type-I and type-III restriction-modification enzymes contain a helicase-like domain.

Authors:  A E Gorbalenya; E V Koonin
Journal:  FEBS Lett       Date:  1991-10-21       Impact factor: 4.124

5.  Purification and biochemical characterisation of the EcoR124 type I modification methylase.

Authors:  I Taylor; J Patel; K Firman; G Kneale
Journal:  Nucleic Acids Res       Date:  1992-01-25       Impact factor: 16.971

6.  Calculation of protein extinction coefficients from amino acid sequence data.

Authors:  S C Gill; P H von Hippel
Journal:  Anal Biochem       Date:  1989-11-01       Impact factor: 3.365

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

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Authors:  D T Dryden; L P Cooper; N E Murray
Journal:  J Biol Chem       Date:  1993-06-25       Impact factor: 5.157

Review 9.  Complex restriction enzymes: NTP-driven molecular motors.

Authors:  Aude A Bourniquel; Thomas A Bickle
Journal:  Biochimie       Date:  2002-11       Impact factor: 4.079

10.  Characterization of the DNA methylase activity of the restriction enzyme from Escherichia coli K.

Authors:  J Burckhardt; J Weisemann; R Yuan
Journal:  J Biol Chem       Date:  1981-04-25       Impact factor: 5.157

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  3 in total

1.  Crystallization and preliminary X-ray diffraction analysis of the HsdR subunit of a putative type I restriction enzyme from Vibrio vulnificus YJ016.

Authors:  Nguyen To Uyen; Kosuke Nishi; Suk Youl Park; Ji Woo Choi; Hyun Ju Lee; Jeong Sun Kim
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-09-30

2.  Functional coupling of duplex translocation to DNA cleavage in a type I restriction enzyme.

Authors:  Eva Csefalvay; Mikalai Lapkouski; Alena Guzanova; Ladislav Csefalvay; Tatsiana Baikova; Igor Shevelev; Vitali Bialevich; Katsiaryna Shamayeva; Pavel Janscak; Ivana Kuta Smatanova; Santosh Panjikar; Jannette Carey; Marie Weiserova; Rüdiger Ettrich
Journal:  PLoS One       Date:  2015-06-03       Impact factor: 3.240

Review 3.  Type I restriction enzymes and their relatives.

Authors:  Wil A M Loenen; David T F Dryden; Elisabeth A Raleigh; Geoffrey G Wilson
Journal:  Nucleic Acids Res       Date:  2013-09-24       Impact factor: 16.971

  3 in total

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