Literature DB >> 17620015

PDZ domains: folding and binding.

Per Jemth1, Stefano Gianni.   

Abstract

The PDZ domain is one of the most common protein-protein interaction domains in humans, and it is found in all kingdoms of life. We will review recent progress in the understanding of biophysical aspects of PDZ domains with emphasis on the folding and binding reactions. Finally, we discuss an intriguing correlation between stability and binding of peptide for PDZ2 from PTP-BL.

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Year:  2007        PMID： 17620015     DOI： 10.1021/bi7008618

Source DB:  PubMed          Journal:  Biochemistry        ISSN： 0006-2960            Impact factor:   3.162


  72 in total

1.  An oligomeric equilibrium intermediate as the precursory nucleus of globular and fibrillar supramacromolecular assemblies in a PDZ domain.

Authors:  Javier Murciano-Calles; Eva S Cobos; Pedro L Mateo; Ana Camara-Artigas; Jose C Martinez
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

2.  The plastic energy landscape of protein folding: a triangular folding mechanism with an equilibrium intermediate for a small protein domain.

Authors:  S Raza Haq; Maike C Jürgens; Celestine N Chi; Cha-San Koh; Lisa Elfström; Maria Selmer; Stefano Gianni; Per Jemth
Journal:  J Biol Chem       Date:  2010-03-30       Impact factor: 5.157

3.  Structural characterization of a misfolded intermediate populated during the folding process of a PDZ domain.

Authors:  Stefano Gianni; Ylva Ivarsson; Alfonso De Simone; Carlo Travaglini-Allocatelli; Maurizio Brunori; Michele Vendruscolo
Journal:  Nat Struct Mol Biol       Date:  2010-11-14       Impact factor: 15.369

4.  Prediction of protease substrates using sequence and structure features.

Authors:  David T Barkan; Daniel R Hostetter; Sami Mahrus; Ursula Pieper; James A Wells; Charles S Craik; Andrej Sali
Journal:  Bioinformatics       Date:  2010-05-26       Impact factor: 6.937

5.  Peptide Binding to a PDZ Domain by Electrostatic Steering via Nonnative Salt Bridges.

Authors:  Nicolas Blöchliger; Min Xu; Amedeo Caflisch
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

6.  Gephyrin-mediated γ-aminobutyric acid type A and glycine receptor clustering relies on a common binding site.

Authors:  Hans-Michael Maric; Jayanta Mukherjee; Verena Tretter; Stephen J Moss; Hermann Schindelin
Journal:  J Biol Chem       Date:  2011-10-17       Impact factor: 5.157

7.  Reassessing a sparse energetic network within a single protein domain.

Authors:  Celestine N Chi; Lisa Elfström; Yao Shi; Tord Snäll; Ake Engström; Per Jemth
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-13       Impact factor: 11.205

8.  DEPTOR is an mTOR inhibitor frequently overexpressed in multiple myeloma cells and required for their survival.

Authors:  Timothy R Peterson; Mathieu Laplante; Carson C Thoreen; Yasemin Sancak; Seong A Kang; W Michael Kuehl; Nathanael S Gray; David M Sabatini
Journal:  Cell       Date:  2009-05-14       Impact factor: 41.582

9.  Retinol-binding site in interphotoreceptor retinoid-binding protein (IRBP): a novel hydrophobic cavity.

Authors:  Federico Gonzalez-Fernandez; Thomas Bevilacqua; Kee-Il Lee; Reena Chandrashekar; Larson Hsu; Mary Alice Garlipp; Jennifer B Griswold; Rosalie K Crouch; Debashis Ghosh
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-07-15       Impact factor: 4.799

10.  Stereochemical determinants of C-terminal specificity in PDZ peptide-binding domains: a novel contribution of the carboxylate-binding loop.

Authors:  Jeanine F Amacher; Patrick R Cushing; Christopher D Bahl; Tobias Beck; Dean R Madden
Journal:  J Biol Chem       Date:  2012-12-15       Impact factor: 5.157
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