Literature DB >> 17614153

Kinetic modeling and sensitivity analysis of acetone-butanol-ethanol production.

Hideaki Shinto1, Yukihiro Tashiro, Mayu Yamashita, Genta Kobayashi, Tatsuya Sekiguchi, Taizo Hanai, Yuki Kuriya, Masahiro Okamoto, Kenji Sonomoto.   

Abstract

A kinetic simulation model of metabolic pathways that describes the dynamic behaviors of metabolites in acetone-butanol-ethanol (ABE) production by Clostridium saccharoperbutylacetonicum N1-4 was proposed using a novel simulator WinBEST-KIT. This model was validated by comparing with experimental time-course data of metabolites in batch cultures over a wide range of initial glucose concentrations (36.1-295 mM). By introducing substrate inhibition, product inhibition of butanol, activation of butyrate and considering the cessation of metabolic reactions in the case of insufficiency of energy after glucose exhaustion, the revised model showed 0.901 of squared correlation coefficient (r(2)) between experimental time-course of metabolites and calculated ones. Thus, the final revised model is assumed to be one of the best candidates for kinetic simulation describing dynamic behavior of metabolites in ABE production. Sensitivity analysis revealed that 5% increase in reaction of reverse pathway of butyrate production (R(17)) and 5% decrease in reaction of CoA transferase for butyrate (R(15)) highly contribute to high production of butanol. These system analyses should be effective in the elucidation which pathway is metabolic bottleneck for high production of butanol.

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Year:  2007        PMID: 17614153     DOI: 10.1016/j.jbiotec.2007.05.005

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  13 in total

1.  Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.

Authors:  Chen Liao; Seung-Oh Seo; Venhar Celik; Huaiwei Liu; Wentao Kong; Yi Wang; Hans Blaschek; Yong-Su Jin; Ting Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-22       Impact factor: 11.205

2.  Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution.

Authors:  Yixiang Shi; Yi-Xue Li; Yuan-Yuan Li
Journal:  BMC Bioinformatics       Date:  2010-12-14       Impact factor: 3.169

3.  A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture.

Authors:  Sylvia Haus; Sara Jabbari; Thomas Millat; Holger Janssen; Ralf-Jörg Fischer; Hubert Bahl; John R King; Olaf Wolkenhauer
Journal:  BMC Syst Biol       Date:  2011-01-19

4.  An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis.

Authors:  Ru-Dong Li; Yuan-Yuan Li; Ling-Yi Lu; Cong Ren; Yi-Xue Li; Lei Liu
Journal:  BMC Syst Biol       Date:  2011-06-20

Review 5.  Computational strategies for a system-level understanding of metabolism.

Authors:  Paolo Cazzaniga; Chiara Damiani; Daniela Besozzi; Riccardo Colombo; Marco S Nobile; Daniela Gaglio; Dario Pescini; Sara Molinari; Giancarlo Mauri; Lilia Alberghina; Marco Vanoni
Journal:  Metabolites       Date:  2014-11-24

6.  Kinetic Study of Acetone-Butanol-Ethanol Fermentation in Continuous Culture.

Authors:  Edward A Buehler; Ali Mesbah
Journal:  PLoS One       Date:  2016-08-03       Impact factor: 3.240

Review 7.  Amino acid catabolism-directed biofuel production in Clostridium sticklandii: An insight into model-driven systems engineering.

Authors:  C Sangavai; P Chellapandi
Journal:  Biotechnol Rep (Amst)       Date:  2017-11-08

8.  Steady-State-Preserving Simulation of Genetic Regulatory Systems.

Authors:  Ruqiang Zhang; Julius Osato Ehigie; Xilin Hou; Xiong You; Chunlu Yuan
Journal:  Comput Math Methods Med       Date:  2017-01-19       Impact factor: 2.238

9.  pH-induced gene regulation of solvent production by Clostridium acetobutylicum in continuous culture: parameter estimation and sporulation modelling.

Authors:  Graeme J Thorn; John R King; Sara Jabbari
Journal:  Math Biosci       Date:  2012-11-28       Impact factor: 2.144

10.  Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture.

Authors:  Thomas Millat; Holger Janssen; Hubert Bahl; Ralf-Jörg Fischer; Olaf Wolkenhauer
Journal:  Microb Biotechnol       Date:  2013-01-21       Impact factor: 5.813

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