Literature DB >> 17608023

Off-targeting and other non-specific effects of RNAi experiments in mammalian cells.

Petr Svoboda1.   

Abstract

The RNA interference (RNAi) approach is an efficient and widely used method for silencing plant and animal genes. However, numerous studies have highlighted several obstacles that need to be overcome in order to achieve a specific and efficient silencing effect. Among the major problems of using RNAi in mammalian systems are non-specific effects, such as an undesirable activation of the IFN response, and off-target effects, whereby partial complementarity of an RNAi trigger to non-targeted transcripts causes unwanted silencing effects. The causes of non-specific effects and possible approaches to minimize them are discussed in this review.

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Year:  2007        PMID: 17608023

Source DB:  PubMed          Journal:  Curr Opin Mol Ther        ISSN: 1464-8431


  45 in total

1.  Effects of transgenic sterilization constructs and their repressor compounds on hatch, developmental rate and early survival of electroporated channel catfish embryos and fry.

Authors:  Baofeng Su; Mei Shang; Chao Li; Dayan A Perera; Carl A Pinkert; Michael H Irwin; Eric Peatman; Peter Grewe; Jawahar G Patil; Rex A Dunham
Journal:  Transgenic Res       Date:  2014-11-04       Impact factor: 2.788

Review 2.  Overcoming Gene-Delivery Hurdles: Physiological Considerations for Nonviral Vectors.

Authors:  Andrew B Hill; Mingfu Chen; Chih-Kuang Chen; Blaine A Pfeifer; Charles H Jones
Journal:  Trends Biotechnol       Date:  2015-12-23       Impact factor: 19.536

3.  A promoter-hijack strategy for conditional shutdown of multiply spliced essential cell cycle genes.

Authors:  Kumiko Samejima; Hiromi Ogawa; Carol A Cooke; Damien F Hudson; Damien Hudson; Fiona Macisaac; Susana A Ribeiro; Paola Vagnarelli; Stefano Cardinale; Alastair Kerr; Fan Lai; Sandrine Ruchaud; Zuojun Yue; William C Earnshaw
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-08       Impact factor: 11.205

Review 4.  RNAi mechanisms and applications.

Authors:  Daniel Kim; John Rossi
Journal:  Biotechniques       Date:  2008-04       Impact factor: 1.993

5.  Increased siRNA duplex stability correlates with reduced off-target and elevated on-target effects.

Authors:  Sebastian Petri; Anne Dueck; Gerhard Lehmann; Nicholas Putz; Sabine Rüdel; Elisabeth Kremmer; Gunter Meister
Journal:  RNA       Date:  2011-03-02       Impact factor: 4.942

Review 6.  RNA interference-based therapeutics for human immunodeficiency virus HIV-1 treatment: synthetic siRNA or vector-based shRNA?

Authors:  Sandesh Subramanya; Sang-Soo Kim; N Manjunath; Premlata Shankar
Journal:  Expert Opin Biol Ther       Date:  2010-02       Impact factor: 4.388

Review 7.  Sequence-non-specific effects of RNA interference triggers and microRNA regulators.

Authors:  Marta Olejniczak; Paulina Galka; Wlodzimierz J Krzyzosiak
Journal:  Nucleic Acids Res       Date:  2009-10-20       Impact factor: 16.971

8.  Shortcomings of short hairpin RNA-based transgenic RNA interference in mouse oocytes.

Authors:  Lenka Sarnova; Radek Malik; Radislav Sedlacek; Petr Svoboda
Journal:  J Negat Results Biomed       Date:  2010-10-12

9.  Neuronal calcium sensor synaptotagmin-9 is not involved in the regulation of glucose homeostasis or insulin secretion.

Authors:  Natalia Gustavsson; Xiaorui Wang; Yue Wang; Tingting Seah; Jun Xu; George K Radda; Thomas C Südhof; Weiping Han
Journal:  PLoS One       Date:  2010-11-09       Impact factor: 3.240

10.  Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems.

Authors:  Poornima Parameswaran; Ella Sklan; Courtney Wilkins; Trever Burgon; Melanie A Samuel; Rui Lu; K Mark Ansel; Vigo Heissmeyer; Shirit Einav; William Jackson; Tammy Doukas; Suman Paranjape; Charlotta Polacek; Flavia Barreto dos Santos; Roxana Jalili; Farbod Babrzadeh; Baback Gharizadeh; Dirk Grimm; Mark Kay; Satoshi Koike; Peter Sarnow; Mostafa Ronaghi; Shou-Wei Ding; Eva Harris; Marie Chow; Michael S Diamond; Karla Kirkegaard; Jeffrey S Glenn; Andrew Z Fire
Journal:  PLoS Pathog       Date:  2010-02-12       Impact factor: 6.823

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