Literature DB >> 17606983

Promoting transcriptome diversity.

Robert L Strausberg1, Samuel Levy.   

Abstract

Although the number of protein-encoding human genes is more limited than many had estimated, the human transcript repertoire is much more diverse than anticipated. In part, transcript diversity is generated through the use of alternative promoters and alternate splicing. In addition, based on discoveries using technologies such as full-length cDNA libraries and whole genome tiling microarrays, it is now likely that non-protein-encoding transcripts comprise a substantial fraction of the human RNA population. Much attention is currently focused on understanding the role of alternative promoters in generating transcript diversity, both for non-protein-encoding (ncRNAs) and protein-encoding RNAs.

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Year:  2007        PMID: 17606983     DOI: 10.1101/gr.6499807

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  10 in total

1.  Novel promoter and alternate transcription start site of the human serotonin reuptake transporter in intestinal mucosa.

Authors:  D R Linden; S L White; E M Brooks; G M Mawe
Journal:  Neurogastroenterol Motil       Date:  2009-02-13       Impact factor: 3.598

2.  In-depth cDNA library sequencing provides quantitative gene expression profiling in cancer biomarker discovery.

Authors:  Wanling Yang; Dingge Ying; Yu-Lung Lau
Journal:  Genomics Proteomics Bioinformatics       Date:  2009-06       Impact factor: 7.691

3.  intePareto: an R package for integrative analyses of RNA-Seq and ChIP-Seq data.

Authors:  Yingying Cao; Simo Kitanovski; Daniel Hoffmann
Journal:  BMC Genomics       Date:  2020-12-29       Impact factor: 3.969

4.  Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension.

Authors:  Sonal Dahale; Jorge Ruiz-Orera; Jan Silhavy; Norbert Hübner; Sebastiaan van Heesch; Michal Pravenec; Santosh S Atanur
Journal:  Life Sci Alliance       Date:  2022-01-07

5.  Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes.

Authors:  Chungoo Park; Kateryna D Makova
Journal:  Genome Biol       Date:  2009-01-28       Impact factor: 13.583

6.  Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus.

Authors:  Christian Obermeier; Bashir Hosseini; Wolfgang Friedt; Rod Snowdon
Journal:  BMC Genomics       Date:  2009-07-03       Impact factor: 3.969

7.  RNA sequencing of cancer reveals novel splicing alterations.

Authors:  Jeyanthy Eswaran; Anelia Horvath; Sucheta Godbole; Sirigiri Divijendra Reddy; Prakriti Mudvari; Kazufumi Ohshiro; Dinesh Cyanam; Sujit Nair; Suzanne A W Fuqua; Kornelia Polyak; Liliana D Florea; Rakesh Kumar
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

8.  Generation of a non-small cell lung cancer transcriptome microarray.

Authors:  Austin Tanney; Gavin R Oliver; Vadim Farztdinov; Richard D Kennedy; Jude M Mulligan; Ciaran E Fulton; Susan M Farragher; John K Field; Patrick G Johnston; D Paul Harkin; Vitali Proutski; Karl A Mulligan
Journal:  BMC Med Genomics       Date:  2008-05-30       Impact factor: 3.063

9.  The global landscape of intron retentions in lung adenocarcinoma.

Authors:  Qu Zhang; Hua Li; Hong Jin; Huibiao Tan; Jun Zhang; Sitong Sheng
Journal:  BMC Med Genomics       Date:  2014-03-20       Impact factor: 3.063

10.  Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data.

Authors:  Quan H Nguyen; Ross L Tellam; Marina Naval-Sanchez; Laercio R Porto-Neto; William Barendse; Antonio Reverter; Benjamin Hayes; James Kijas; Brian P Dalrymple
Journal:  Gigascience       Date:  2018-03-01       Impact factor: 6.524

  10 in total

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