Literature DB >> 17602514

Thermodynamic characterization of the osmolyte effect on protein stability and the effect of GdnHCl on the protein denatured state.

Pannur Venkatesu1, Ming-Jer Lee, Ho-Mu Lin.   

Abstract

To understand the biomolecular interactions of osmolytes or guanidine hydrochloride (GdnHCl) with protein functional groups, we have determined the apparent transfer free energies (Delta'(tr)) of a homologous series of cyclic dipeptides (CDs) from water to aqueous solutions of osmolytes or GdnHCl through solubility measurements, as a function of osmolyte or GdnHCl concentration at 25 degrees C under atmospheric pressure. The materials investigated in the present study included the CDs of cyclo(Gly-Gly), cyclo(Ala-Gly), cyclo(Ala-Ala), cyclo(Leu-Ala), and cyclo(Val-Val), the osmolytes of trimethylamine N-oxide (TMAO), sarcosine, betaine, proline, and sucrose, and the denaturant of GdnHCl. We observed positive values of (Delta'(tr)) for CDs from water to osmolyte, indicating that interactions between osmolytes and CDs are unfavorable. In contrast, negative (Delta'(tr)) contributions were observed for CDs from water to GdnHCl, revealing that favorable interactions are predominant. The experimental results were further used to estimate the transfer free energies (Delta'(tr)) of the peptide bond (-CONH-), the peptide backbone unit (-CH2C=ONH-), and various functional groups from water to aqueous solutions of osmolyte or GdnHCl.

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Year:  2007        PMID: 17602514     DOI: 10.1021/jp0701901

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  11 in total

1.  Differential scanning calorimetry and fluorescence study of lactoperoxidase as a function of guanidinium-HCl, urea, and pH.

Authors:  Bogumil Zelent; Kim A Sharp; Jane M Vanderkooi
Journal:  Biochim Biophys Acta       Date:  2010-03-16

2.  Quantifying additive interactions of the osmolyte proline with individual functional groups of proteins: comparisons with urea and glycine betaine, interpretation of m-values.

Authors:  Roger C Diehl; Emily J Guinn; Michael W Capp; Oleg V Tsodikov; M Thomas Record
Journal:  Biochemistry       Date:  2013-08-21       Impact factor: 3.162

3.  Changes in apparent molar water volume and DKP solubility yield insights on the Hofmeister effect.

Authors:  Alexander Y Payumo; R Michael Huijon; Deauna D Mansfield; Laurel M Belk; Annie K Bui; Anne E Knight; Daryl K Eggers
Journal:  J Phys Chem B       Date:  2011-11-11       Impact factor: 2.991

4.  TMAO-Protein Preferential Interaction Profile Determines TMAO's Conditional In Vivo Compatibility.

Authors:  Jiang Hong; Shangqin Xiong
Journal:  Biophys J       Date:  2016-11-01       Impact factor: 4.033

Review 5.  Proline mechanisms of stress survival.

Authors:  Xinwen Liang; Lu Zhang; Sathish Kumar Natarajan; Donald F Becker
Journal:  Antioxid Redox Signal       Date:  2013-05-23       Impact factor: 8.401

6.  Sorbitol counteracts temperature- and chemical-induced denaturation of a recombinant α-amylase from alkaliphilic Bacillus sp. TS-23.

Authors:  Meng-Chun Chi; Tai-Jung Wu; Hsing-Ling Chen; Huei-Fen Lo; Long-Liu Lin
Journal:  J Ind Microbiol Biotechnol       Date:  2012-08-12       Impact factor: 3.346

7.  Interactions of the osmolyte glycine betaine with molecular surfaces in water: thermodynamics, structural interpretation, and prediction of m-values.

Authors:  Michael W Capp; Laurel M Pegram; Ruth M Saecker; Megan Kratz; Demian Riccardi; Timothy Wendorff; Jonathan G Cannon; M Thomas Record
Journal:  Biochemistry       Date:  2009-11-03       Impact factor: 3.162

8.  Mimicking the plant cell interior under water stress by macromolecular crowding: disordered dehydrin proteins are highly resistant to structural collapse.

Authors:  Jean-Marie Mouillon; Sylvia K Eriksson; Pia Harryson
Journal:  Plant Physiol       Date:  2008-10-10       Impact factor: 8.340

9.  Measuring the interaction of urea and protein-stabilizing osmolytes with the nonpolar surface of hydroxypropylcellulose.

Authors:  Christopher Stanley; Donald C Rau
Journal:  Biochemistry       Date:  2008-06-24       Impact factor: 3.162

10.  Changes in water structure induced by the guanidinium cation and implications for protein denaturation.

Authors:  J Nathan Scott; Nathaniel V Nucci; Jane M Vanderkooi
Journal:  J Phys Chem A       Date:  2008-10-08       Impact factor: 2.781

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