Literature DB >> 1758880

FASTRUN: a special purpose, hardwired computer for molecular simulation.

R Fine1, G Dimmler, C Levinthal.   

Abstract

We describe the design, construction, and performance of a special purpose, hardwired accelerator for molecular mechanical calculations called FASTRUN. The processor was designed at Columbia University in 1984, constructed in the Instrumentation Division of Brookhaven National Laboratory, and delivered to Columbia in final form in 1989. It was rendered functional for molecular mechanics in early 1990. Together with its host Star array processor, FASTRUN has a measured performance for molecular dynamics simulations which compares favorably with present day supercomputers. The hardware replication cost of FASTRUN is on the order of $100,000.00.

Mesh:

Year:  1991        PMID: 1758880     DOI: 10.1002/prot.340110403

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  8 in total

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Journal:  J Chem Phys       Date:  2016-02-14       Impact factor: 3.488

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Review 3.  Protein folding and misfolding: mechanism and principles.

Authors:  S Walter Englander; Leland Mayne; Mallela M G Krishna
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4.  Data-Driven Mapping of Gas-Phase Quantum Calculations to General Force Field Lennard-Jones Parameters.

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5.  MDGRAPE-4: a special-purpose computer system for molecular dynamics simulations.

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Journal:  Philos Trans A Math Phys Eng Sci       Date:  2014-08-06       Impact factor: 4.226

Review 6.  Accelerators for Classical Molecular Dynamics Simulations of Biomolecules.

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7.  Complex intramolecular mechanics of G-actin--an elastic network study.

Authors:  Markus Düttmann; Markus Mittnenzweig; Yuichi Togashi; Toshio Yanagida; Alexander S Mikhailov
Journal:  PLoS One       Date:  2012-10-15       Impact factor: 3.240

8.  Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born.

Authors:  Andreas W Götz; Mark J Williamson; Dong Xu; Duncan Poole; Scott Le Grand; Ross C Walker
Journal:  J Chem Theory Comput       Date:  2012-03-26       Impact factor: 6.006

  8 in total

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