Literature DB >> 17586830

Web-based GeneChip analysis system for large-scale collaborative projects.

Manhong Dai1, Pinglang Wang, Elvis Jakupovic, Stanley J Watson, Fan Meng.   

Abstract

UNLABELLED: The Web-Based GeneChip Analysis System (WGAS) is developed to overcome limitations in analysis setup efficiency, data and procedure sharing, as well as security issues in existing commercial and public domain solutions. It also incorporates unique functions and resources for more accurate and flexible GeneChip analysis. AVAILABILITY: WGAS is freely available at: http://arrayanalysis.mbni.med.umich.edu/arrayanalysis.html.

Mesh：

Year:  2007        PMID： 17586830     DOI： 10.1093/bioinformatics/btm297

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  8 in total

1.  A-MADMAN: annotation-based microarray data meta-analysis tool.

Authors:  Andrea Bisognin; Alessandro Coppe; Francesco Ferrari; Davide Risso; Chiara Romualdi; Silvio Bicciato; Stefania Bortoluzzi
Journal:  BMC Bioinformatics       Date:  2009-06-29       Impact factor: 3.169

2.  Genomic responses from the estrogen-responsive element-dependent signaling pathway mediated by estrogen receptor alpha are required to elicit cellular alterations.

Authors:  Stephanie L Nott; Yanfang Huang; Xiaodong Li; Brian R Fluharty; Xing Qiu; Wade V Welshons; Shuyuan Yeh; Mesut Muyan
Journal:  J Biol Chem       Date:  2009-03-24       Impact factor: 5.157

3.  Gene expression profiling reveals that the regulation of estrogen-responsive element-independent genes by 17 beta-estradiol-estrogen receptor beta is uncoupled from the induction of phenotypic changes in cell models.

Authors:  Xiaodong Li; Stephanie L Nott; Yanfang Huang; Russell Hilf; Robert A Bambara; Xing Qiu; Andrei Yakovlev; Stephen Welle; Mesut Muyan
Journal:  J Mol Endocrinol       Date:  2008-05       Impact factor: 5.098

4.  RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples.

Authors:  Angel Alvarez; Peter J Woolf
Journal:  BMC Bioinformatics       Date:  2011-06-17       Impact factor: 3.169

5.  INMEX--a web-based tool for integrative meta-analysis of expression data.

Authors:  Jianguo Xia; Christopher D Fjell; Matthew L Mayer; Olga M Pena; David S Wishart; Robert E W Hancock
Journal:  Nucleic Acids Res       Date:  2013-06-12       Impact factor: 16.971

6.  Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.

Authors:  Donna M Toleno; Gabriel Renaud; Tyra G Wolfsberg; Munirul Islam; Derek E Wildman; Kimberly D Siegmund; Joseph G Hacia
Journal:  BMC Bioinformatics       Date:  2009-03-05       Impact factor: 3.169

7.  Meta-analysis of expression signatures of muscle atrophy: gene interaction networks in early and late stages.

Authors:  Enrica Calura; Stefano Cagnin; Anna Raffaello; Paolo Laveder; Gerolamo Lanfranchi; Chiara Romualdi
Journal:  BMC Genomics       Date:  2008-12-23       Impact factor: 3.969

8.  Unified Transcriptomic Signature of Arbuscular Mycorrhiza Colonization in Roots of Medicago truncatula by Integration of Machine Learning, Promoter Analysis, and Direct Merging Meta-Analysis.

Authors:  Manijeh Mohammadi-Dehcheshmeh; Ali Niazi; Mansour Ebrahimi; Mohammadreza Tahsili; Zahra Nurollah; Reyhaneh Ebrahimi Khaksefid; Mahdi Ebrahimi; Esmaeil Ebrahimie
Journal:  Front Plant Sci       Date:  2018-11-12       Impact factor: 5.753
  8 in total

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