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Literature DB >> 17586547

MAnGO: an interactive R-based tool for two-colour microarray analysis.

Laetitia Marisa¹, Jean-Laurent Ichanté, Nancie Reymond, Lawrence Aggerbeck, Hervé Delacroix, Marie-Hélène Mucchielli-Giorgi.

Abstract

UNLABELLED: MAnGO (Microarray Analysis at the Gif/Orsay platform) is an interactive R-based tool for the analysis of two-colour microarray experiments. It is a compilation of various methods, which allows the user (1) to control data quality by detecting biases with a large number of visual representations, (2) to pre-process data (filtering and normalization) and (3) to carry out differential analyses. MAnGO is not only a 'turn-key' tool, oriented towards biologists but also a flexible and adaptable R script oriented towards bioinformaticians. AVAILABILITY: http://bioinfome.cgm.cnrs-gif.fr/.

Entities: Species

Mesh：

Year: 2007 PMID： 17586547 DOI： 10.1093/bioinformatics/btm321

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

13 in total

1. Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula.

Authors: Federico Ariel; Marianne Brault-Hernandez; Carole Laffont; Emeline Huault; Mathias Brault; Julie Plet; Michael Moison; Sandrine Blanchet; Jean Laurent Ichanté; Mireille Chabaud; Sébastien Carrere; Martin Crespi; Raquel L Chan; Florian Frugier
Journal: Plant Cell Date: 2012-09-28 Impact factor: 11.277

2. The compact root architecture1 gene regulates lignification, flavonoid production, and polar auxin transport in Medicago truncatula.

Authors: Carole Laffont; Sandrine Blanchet; Catherine Lapierre; Lysiane Brocard; Pascal Ratet; Martin Crespi; Ulrike Mathesius; Florian Frugier
Journal: Plant Physiol Date: 2010-06-03 Impact factor: 8.340

3. Maintaining two mating types: structure of the mating type locus and its role in heterokaryosis in Podospora anserina.

Authors: Pierre Grognet; Frédérique Bidard; Claire Kuchly; Laetitia Chan Ho Tong; Evelyne Coppin; Jinane Ait Benkhali; Arnaud Couloux; Patrick Wincker; Robert Debuchy; Philippe Silar
Journal: Genetics Date: 2014-02-20 Impact factor: 4.562

4. Mutations in the Saccharomyces cerevisiae kinase Cbk1p lead to a fertility defect that can be suppressed by the absence of Brr1p or Mpt5p (Puf5p), proteins involved in RNA metabolism.

Authors: Myriam Bourens; Cristina Panozzo; Aleksandra Nowacka; Sandrine Imbeaud; Marie-Hélène Mucchielli; Christopher J Herbert
Journal: Genetics Date: 2009-06-22 Impact factor: 4.562

5. A head and neck cancer tumor response-specific gene signature for cisplatin, 5-fluorouracil induction chemotherapy fails with added taxanes.

Authors: Céline Tomkiewicz; Stéphane Hans; Marie Hélène Mucchielli; Nicolas Agier; Hervé Delacroix; Laetitia Marisa; Daniel Brasnu; Lawrence P Aggerbeck; Cécile Badoual; Robert Barouki; Martine Aggerbeck
Journal: PLoS One Date: 2012-10-09 Impact factor: 3.240

6. Genome-wide gene expression profiling of fertilization competent mycelium in opposite mating types in the heterothallic fungus Podospora anserina.

Authors: Frédérique Bidard; Jinane Aït Benkhali; Evelyne Coppin; Sandrine Imbeaud; Pierre Grognet; Hervé Delacroix; Robert Debuchy
Journal: PLoS One Date: 2011-06-28 Impact factor: 3.240

MAnGO: an interactive R-based tool for two-colour microarray analysis.

1. Two direct targets of cytokinin signaling regulate symbiotic nodulation in Medicago truncatula.

2. The compact root architecture1 gene regulates lignification, flavonoid production, and polar auxin transport in Medicago truncatula.

3. Maintaining two mating types: structure of the mating type locus and its role in heterokaryosis in Podospora anserina.

4. Mutations in the Saccharomyces cerevisiae kinase Cbk1p lead to a fertility defect that can be suppressed by the absence of Brr1p or Mpt5p (Puf5p), proteins involved in RNA metabolism.

5. A head and neck cancer tumor response-specific gene signature for cisplatin, 5-fluorouracil induction chemotherapy fails with added taxanes.

6. Genome-wide gene expression profiling of fertilization competent mycelium in opposite mating types in the heterothallic fungus Podospora anserina.

7. Global analysis of extracytoplasmic stress signaling in Escherichia coli.

8. Genome-wide transcriptional response of the archaeon Thermococcus gammatolerans to cadmium.

9. The transcriptional response to nonself in the fungus Podospora anserina.

10. Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula.