Literature DB >> 17586542

ViroBLAST: a stand-alone BLAST web server for flexible queries of multiple databases and user's datasets.

Wenjie Deng1, David C Nickle, Gerald H Learn, Brandon Maust, James I Mullins.   

Abstract

UNLABELLED: ViroBLAST is a stand-alone BLAST web interface for nucleotide and amino acid sequence similarity searches. It extends the utility of BLAST to query against multiple sequence databases and user sequence datasets, and provides a friendly output to easily parse and navigate BLAST results. ViroBLAST is readily useful for all research areas that require BLAST functions and is available online and as a downloadable archive for independent installation. AVAILABILITY: http://indra.mullins.microbiol.washington.edu/blast/viroblast.php.

Mesh：

Year:  2007        PMID： 17586542     DOI： 10.1093/bioinformatics/btm331

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  105 in total

1.  What lies beneath? Fungal diversity at the bottom of Lake Michigan and Lake Superior.

Authors:  Hannah E Wahl; Daniel B Raudabaugh; Elizabeth M Bach; Tiffany S Bone; Mark R Luttenton; Robert H Cichewicz; Andrew N Miller
Journal:  J Great Lakes Res       Date:  2018-01-10       Impact factor: 2.480

2.  A Trypsin Family Protein Gene Controls Tillering and Leaf Shape in Barley.

Authors:  Lingzhen Ye; Yin Wang; Lizhi Long; Hao Luo; Qiufang Shen; Sue Broughton; Dianxing Wu; Xiaoli Shu; Fei Dai; Chengdao Li; Guoping Zhang
Journal:  Plant Physiol       Date:  2019-08-19       Impact factor: 8.340

3.  PcarnBase: development of a transcriptomic database for the brain coral Platygyra carnosus.

Authors:  Jin Sun; Qian Chen; Janice C Y Lun; Jianliang Xu; Jian-Wen Qiu
Journal:  Mar Biotechnol (NY)       Date:  2012-08-09       Impact factor: 3.619

4.  Mutation of HIV-1 genomes in a clinical population treated with the mutagenic nucleoside KP1461.

Authors:  James I Mullins; Laura Heath; James P Hughes; Jessica Kicha; Sheila Styrchak; Kim G Wong; Ushnal Rao; Alexis Hansen; Kevin S Harris; Jean-Pierre Laurent; Deyu Li; Jeffrey H Simpson; John M Essigmann; Lawrence A Loeb; Jeffrey Parkins
Journal:  PLoS One       Date:  2011-01-14       Impact factor: 3.240

5.  YeastWeb: a workset-centric web resource for gene family analysis in yeast.

Authors:  Yanhui Chu; Xiaohuan Yuan; Yanqin Guo; Yufei Zhang; Yan Wu; Haifeng Liu; Dan Wu; Haihua Bao; Lixin Guan; Xiudong Jin
Journal:  BMC Genomics       Date:  2010-07-13       Impact factor: 3.969

6.  Phylogenetic insights into regional HIV transmission.

Authors:  Ann M Dennis; Stéphane Hué; Christopher B Hurt; Sonia Napravnik; Joseph Sebastian; Deenan Pillay; Joseph J Eron
Journal:  AIDS       Date:  2012-09-10       Impact factor: 4.177

7.  4E10-resistant HIV-1 isolated from four subjects with rare membrane-proximal external region polymorphisms.

Authors:  Kyle J Nakamura; Johannes S Gach; Laura Jones; Katherine Semrau; Jan Walter; Frederic Bibollet-Ruche; Julie M Decker; Laura Heath; William D Decker; Moses Sinkala; Chipepo Kankasa; Donald Thea; James Mullins; Louise Kuhn; Michael B Zwick; Grace M Aldrovandi
Journal:  PLoS One       Date:  2010-03-23       Impact factor: 3.240

8.  Restriction of HIV-1 genotypes in breast milk does not account for the population transmission genetic bottleneck that occurs following transmission.

Authors:  Laura Heath; Susan Conway; Laura Jones; Katherine Semrau; Kyle Nakamura; Jan Walter; W Don Decker; Jason Hong; Thomas Chen; Marintha Heil; Moses Sinkala; Chipepo Kankasa; Donald M Thea; Louise Kuhn; James I Mullins; Grace M Aldrovandi
Journal:  PLoS One       Date:  2010-04-20       Impact factor: 3.240

9.  Evidence for limited genetic compartmentalization of HIV-1 between lung and blood.

Authors:  Laura Heath; Alan Fox; Jan McClure; Kurt Diem; Angélique B van 't Wout; Hong Zhao; David R Park; Jeffrey T Schouten; Homer L Twigg; Lawrence Corey; James I Mullins; John E Mittler
Journal:  PLoS One       Date:  2009-09-14       Impact factor: 3.240

10.  LipocalinPred: a SVM-based method for prediction of lipocalins.

Authors:  Jayashree Ramana; Dinesh Gupta
Journal:  BMC Bioinformatics       Date:  2009-12-24       Impact factor: 3.169
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