Literature DB >> 1757506

CASPER: a computer program used for structural analysis of carbohydrates.

P E Jansson1, L Kenne, G Widmalm.   

Abstract

The computer program CASPER and its algorithms are described. The program is aimed at facilitating the determination of structures of oligosaccharides and regular polysaccharides, requiring as input either the one-dimensional 1H or 13C NMR spectrum or the 2D C,H-correlation NMR spectrum together with information on components and linkages. The databases, the method of simulating spectra, options of the program, and techniques for faster calculations are described as well as an example of a structural determination.

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Year:  1991        PMID： 1757506     DOI： 10.1021/ci00004a013

Source DB:  PubMed          Journal:  J Chem Inf Comput Sci        ISSN： 0095-2338


  7 in total

1.  Single polysaccharide assembly protein that integrates polymerization, termination, and chain-length quality control.

Authors:  Danielle M Williams; Olga G Ovchinnikova; Akihiko Koizumi; Iain L Mainprize; Matthew S Kimber; Todd L Lowary; Chris Whitfield
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-30       Impact factor: 11.205

Review 2.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

3.  Bacteriophage-mediated Glucosylation Can Modify Lipopolysaccharide O-Antigens Synthesized by an ATP-binding Cassette (ABC) Transporter-dependent Assembly Mechanism.

Authors:  Evan Mann; Olga G Ovchinnikova; Jerry D King; Chris Whitfield
Journal:  J Biol Chem       Date:  2015-09-01       Impact factor: 5.157

4.  Structural characterization of an all-aminosugar-containing capsular polysaccharide from Colwellia psychrerythraea 34H.

Authors:  Angela Casillo; Jonas Ståhle; Ermenegilda Parrilli; Filomena Sannino; Daniel E Mitchell; Giuseppina Pieretti; Matthew I Gibson; Gennaro Marino; Rosa Lanzetta; Michelangelo Parrilli; Göran Widmalm; Maria L Tutino; Maria M Corsaro
Journal:  Antonie Van Leeuwenhoek       Date:  2017-02-04       Impact factor: 2.271

5.  The use of glycoinformatics in glycochemistry.

Authors:  Thomas Lütteke
Journal:  Beilstein J Org Chem       Date:  2012-06-21       Impact factor: 2.883

6.  GlyNest and CASPER: two independent approaches to estimate 1H and 13C NMR shifts of glycans available through a common web-interface.

Authors:  Alexander Loss; Roland Stenutz; Eberhard Schwarzer; Claus-W von der Lieth
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

7.  1D 13C-NMR data as molecular descriptors in spectra--structure relationship analysis of oligosaccharides.

Authors:  Florbela Pereira
Journal:  Molecules       Date:  2012-03-28       Impact factor: 4.411
  7 in total

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