Literature DB >> 17572379

The gramicidin ion channel: a model membrane protein.

Devaki A Kelkar1, Amitabha Chattopadhyay.   

Abstract

The linear peptide gramicidin forms prototypical ion channels specific for monovalent cations and has been extensively used to study the organization, dynamics and function of membrane-spanning channels. In recent times, the availability of crystal structures of complex ion channels has challenged the role of gramicidin as a model membrane protein and ion channel. This review focuses on the suitability of gramicidin as a model membrane protein in general, and the information gained from gramicidin to understand lipid-protein interactions in particular. Special emphasis is given to the role and orientation of tryptophan residues in channel structure and function and recent spectroscopic approaches that have highlighted the organization and dynamics of the channel in membrane and membrane-mimetic media.

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Year:  2007        PMID: 17572379     DOI: 10.1016/j.bbamem.2007.05.011

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  74 in total

1.  Peptide model helices in lipid membranes: insertion, positioning, and lipid response on aggregation studied by X-ray scattering.

Authors:  Philipp E Schneggenburger; André Beerlink; Britta Weinhausen; Tim Salditt; Ulf Diederichsen
Journal:  Eur Biophys J       Date:  2010-12-23       Impact factor: 1.733

2.  Gramicidin A directly inhibits mammalian Na(+)/K (+)-ATPase.

Authors:  Yohei Takada; Kentaro Matsuo; Takao Kataoka
Journal:  Mol Cell Biochem       Date:  2008-07-13       Impact factor: 3.396

3.  Density-functional theory study of gramicidin A ion channel geometry and electronic properties.

Authors:  Milica Todorović; David R Bowler; Michael J Gillan; Tsuyoshi Miyazaki
Journal:  J R Soc Interface       Date:  2013-09-25       Impact factor: 4.118

4.  Monitoring membrane protein conformational heterogeneity by fluorescence lifetime distribution analysis using the maximum entropy method.

Authors:  Sourav Haldar; Mamata Kombrabail; G Krishnamoorthy; Amitabha Chattopadhyay
Journal:  J Fluoresc       Date:  2009-10-09       Impact factor: 2.217

5.  Membrane Chaperoning of a Thylakoid Protease Whose Structural Stability Is Modified by the Protonmotive Force.

Authors:  Lucas J McKinnon; Jeremy Fukushima; Joshua K Endow; Kentaro Inoue; Steven M Theg
Journal:  Plant Cell       Date:  2020-03-13       Impact factor: 11.277

6.  Distinguishing gramicidin D conformers through two-dimensional infrared spectroscopy of vibrational excitons.

Authors:  Paul Stevenson; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2015-06-07       Impact factor: 3.488

7.  Observing a model ion channel gating action in model cell membranes in real time in situ: membrane potential change induced alamethicin orientation change.

Authors:  Shuji Ye; Hongchun Li; Feng Wei; Joshua Jasensky; Andrew P Boughton; Pei Yang; Zhan Chen
Journal:  J Am Chem Soc       Date:  2012-04-03       Impact factor: 15.419

8.  The gramicidin channel ion permeation free-energy profile: direct and indirect effects of CHARMM force field improvements.

Authors:  Morad Mustafa; David D Busath
Journal:  Interdiscip Sci       Date:  2009-06       Impact factor: 2.233

9.  Gramicidin pores report the activity of membrane-active enzymes.

Authors:  Sheereen Majd; Erik C Yusko; Alexander D MacBriar; Jerry Yang; Michael Mayer
Journal:  J Am Chem Soc       Date:  2009-11-11       Impact factor: 15.419

10.  Nanopore Fabrication and Application as Biosensors in Neurodegenerative Diseases.

Authors:  Brian Lenhart; Xiaojun Wei; Zehui Zhang; Xiaoqin Wang; Qian Wang; Chang Liu
Journal:  Crit Rev Biomed Eng       Date:  2020
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