Literature DB >> 17572080

The protein folding problem: when will it be solved?

Ken A Dill1, S Banu Ozkan, Thomas R Weikl, John D Chodera, Vincent A Voelz.   

Abstract

The protein folding problem can be viewed as three different problems: defining the thermodynamic folding code; devising a good computational structure prediction algorithm; and answering Levinthal's question regarding the kinetic mechanism of how proteins can fold so quickly. Once regarded as a grand challenge, protein folding has seen much progress in recent years. Folding codes are now being used to successfully design proteins and non-biological foldable polymers; aided by the Critical Assessment of Techniques for Structure Prediction (CASP) competition, protein structure prediction has now become quite good. Even the once-challenging Levinthal puzzle now seems to have an answer--a protein can avoid searching irrelevant conformations and fold quickly by making local independent decisions first, followed by non-local global decisions later.

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Year:  2007        PMID: 17572080     DOI: 10.1016/j.sbi.2007.06.001

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  55 in total

1.  Stochastic simulation of structural properties of natively unfolded and denatured proteins.

Authors:  David Curcó; Catherine Michaux; Guillaume Roussel; Emmanuel Tinti; Eric A Perpète; Carlos Alemán
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

2.  Non-native interactions play an effective role in protein folding dynamics.

Authors:  Patrícia F N Faísca; Ana Nunes; Rui D M Travasso; Eugene I Shakhnovich
Journal:  Protein Sci       Date:  2010-11       Impact factor: 6.725

3.  Union of geometric constraint-based simulations with molecular dynamics for protein structure prediction.

Authors:  Tyler J Glembo; S Banu Ozkan
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

4.  Computational predictions of the mutant behavior of AraC.

Authors:  Monica Berrondo; Jeffrey J Gray; Robert Schleif
Journal:  J Mol Biol       Date:  2010-03-23       Impact factor: 5.469

5.  Protein folding: are we there yet?

Authors:  A Clay Clark
Journal:  Arch Biochem Biophys       Date:  2008-01-01       Impact factor: 4.013

6.  Application of the Wang-Landau algorithm to the dimerization of glycophorin A.

Authors:  Claire Gervais; Thomas Wüst; D P Landau; Ying Xu
Journal:  J Chem Phys       Date:  2009-06-07       Impact factor: 3.488

7.  A novel topology for representing protein folds.

Authors:  Mark R Segal
Journal:  Protein Sci       Date:  2009-04       Impact factor: 6.725

8.  Folding helical proteins in explicit solvent using dihedral-biased tempering.

Authors:  Cheng Zhang; Jianpeng Ma
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-09       Impact factor: 11.205

Review 9.  The role of key residues in structure, function, and stability of cytochrome-c.

Authors:  Sobia Zaidi; Md Imtaiyaz Hassan; Asimul Islam; Faizan Ahmad
Journal:  Cell Mol Life Sci       Date:  2013-04-25       Impact factor: 9.261

10.  Mutational effects on the folding dynamics of a minimized hairpin.

Authors:  Michele Scian; Irene Shu; Katherine A Olsen; Khalil Hassam; Niels H Andersen
Journal:  Biochemistry       Date:  2013-04-05       Impact factor: 3.162

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