Literature DB >> 17570517

The PSI formal document process and its implementation on the PSI website.

Juan Antonio Vizcaíno1, Lennart Martens, Henning Hermjakob, Randall K Julian, Norman W Paton.   

Abstract

The Human Proteome Organisation's Proteomics Standards Initiative (HUPO-PSI) has recently developed formal document processes for reviewing MIAPE documents, specifications, community practice and informational documents. These document workflows rely on community participation as well as more traditional expert review. We here present the web interface used to support these document processes, and explain briefly how interested parties can participate in the review process. The HUPO-PSI website can be found at http://www.psidev.info.

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Year:  2007        PMID: 17570517     DOI: 10.1002/pmic.200700064

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  16 in total

Review 1.  Sperm chromatin: fertile grounds for proteomic discovery of clinical tools.

Authors:  Tammy F Wu; Diana S Chu
Journal:  Mol Cell Proteomics       Date:  2008-05-25       Impact factor: 5.911

2.  The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative.

Authors:  Frank Gibson; Christine Hoogland; Salvador Martinez-Bartolomé; J Alberto Medina-Aunon; Juan Pablo Albar; Gyorgy Babnigg; Anil Wipat; Henning Hermjakob; Jonas S Almeida; Romesh Stanislaus; Norman W Paton; Andrew R Jones
Journal:  Proteomics       Date:  2010-09       Impact factor: 3.984

3.  Proteomics Standards Initiative Extended FASTA Format.

Authors:  Pierre-Alain Binz; Jim Shofstahl; Juan Antonio Vizcaíno; Harald Barsnes; Robert J Chalkley; Gerben Menschaert; Emanuele Alpi; Karl Clauser; Jimmy K Eng; Lydie Lane; Sean L Seymour; Luis Francisco Hernández Sánchez; Gerhard Mayer; Martin Eisenacher; Yasset Perez-Riverol; Eugene A Kapp; Luis Mendoza; Peter R Baker; Andrew Collins; Tim Van Den Bossche; Eric W Deutsch
Journal:  J Proteome Res       Date:  2019-05-23       Impact factor: 4.466

Review 4.  Minimum information about a bioactive entity (MIABE).

Authors:  Sandra Orchard; Bissan Al-Lazikani; Steve Bryant; Dominic Clark; Elizabeth Calder; Ian Dix; Ola Engkvist; Mark Forster; Anna Gaulton; Michael Gilson; Robert Glen; Martin Grigorov; Kim Hammond-Kosack; Lee Harland; Andrew Hopkins; Christopher Larminie; Nick Lynch; Romeena K Mann; Peter Murray-Rust; Elena Lo Piparo; Christopher Southan; Christoph Steinbeck; David Wishart; Henning Hermjakob; John Overington; Janet Thornton
Journal:  Nat Rev Drug Discov       Date:  2011-08-31       Impact factor: 84.694

5.  A community standard format for the representation of protein affinity reagents.

Authors:  David E Gloriam; Sandra Orchard; Daniela Bertinetti; Erik Björling; Erik Bongcam-Rudloff; Carl A K Borrebaeck; Julie Bourbeillon; Andrew R M Bradbury; Antoine de Daruvar; Stefan Dübel; Ronald Frank; Toby J Gibson; Larry Gold; Niall Haslam; Friedrich W Herberg; Tara Hiltke; Jörg D Hoheisel; Samuel Kerrien; Manfred Koegl; Zoltán Konthur; Bernhard Korn; Ulf Landegren; Luisa Montecchi-Palazzi; Sandrine Palcy; Henry Rodriguez; Sonja Schweinsberg; Volker Sievert; Oda Stoevesandt; Michael J Taussig; Marius Ueffing; Mathias Uhlén; Silvère van der Maarel; Christer Wingren; Peter Woollard; David J Sherman; Henning Hermjakob
Journal:  Mol Cell Proteomics       Date:  2009-08-11       Impact factor: 5.911

6.  mzML--a community standard for mass spectrometry data.

Authors:  Lennart Martens; Matthew Chambers; Marc Sturm; Darren Kessner; Fredrik Levander; Jim Shofstahl; Wilfred H Tang; Andreas Römpp; Steffen Neumann; Angel D Pizarro; Luisa Montecchi-Palazzi; Natalie Tasman; Mike Coleman; Florian Reisinger; Puneet Souda; Henning Hermjakob; Pierre-Alain Binz; Eric W Deutsch
Journal:  Mol Cell Proteomics       Date:  2010-08-17       Impact factor: 5.911

7.  The mzIdentML data standard for mass spectrometry-based proteomics results.

Authors:  Andrew R Jones; Martin Eisenacher; Gerhard Mayer; Oliver Kohlbacher; Jennifer Siepen; Simon J Hubbard; Julian N Selley; Brian C Searle; James Shofstahl; Sean L Seymour; Randall Julian; Pierre-Alain Binz; Eric W Deutsch; Henning Hermjakob; Florian Reisinger; Johannes Griss; Juan Antonio Vizcaíno; Matthew Chambers; Angel Pizarro; David Creasy
Journal:  Mol Cell Proteomics       Date:  2012-02-27       Impact factor: 5.911

Review 8.  Development of data representation standards by the human proteome organization proteomics standards initiative.

Authors:  Eric W Deutsch; Juan Pablo Albar; Pierre-Alain Binz; Martin Eisenacher; Andrew R Jones; Gerhard Mayer; Gilbert S Omenn; Sandra Orchard; Juan Antonio Vizcaíno; Henning Hermjakob
Journal:  J Am Med Inform Assoc       Date:  2015-02-28       Impact factor: 4.497

9.  A standardized framing for reporting protein identifications in mzIdentML 1.2.

Authors:  Sean L Seymour; Terry Farrah; Pierre-Alain Binz; Robert J Chalkley; John S Cottrell; Brian C Searle; David L Tabb; Juan Antonio Vizcaíno; Gorka Prieto; Julian Uszkoreit; Martin Eisenacher; Salvador Martínez-Bartolomé; Fawaz Ghali; Andrew R Jones
Journal:  Proteomics       Date:  2014-09-23       Impact factor: 3.984

10.  File formats commonly used in mass spectrometry proteomics.

Authors:  Eric W Deutsch
Journal:  Mol Cell Proteomics       Date:  2012-09-06       Impact factor: 5.911

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