Literature DB >> 17567181

Parallel Markov chain Monte Carlo simulations.

Ruichao Ren1, G Orkoulas.   

Abstract

With strict detailed balance, parallel Monte Carlo simulation through domain decomposition cannot be validated with conventional Markov chain theory, which describes an intrinsically serial stochastic process. In this work, the parallel version of Markov chain theory and its role in accelerating Monte Carlo simulations via cluster computing is explored. It is shown that sequential updating is the key to improving efficiency in parallel simulations through domain decomposition. A parallel scheme is proposed to reduce interprocessor communication or synchronization, which slows down parallel simulation with increasing number of processors. Parallel simulation results for the two-dimensional lattice gas model show substantial reduction of simulation time for systems of moderate and large size.

Year:  2007        PMID: 17567181     DOI: 10.1063/1.2743003

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  2 in total

1.  Parallel Prefetching for Canonical Ensemble Monte Carlo Simulations.

Authors:  Harold W Hatch
Journal:  J Phys Chem A       Date:  2020-08-25       Impact factor: 2.781

2.  A primer on high-throughput computing for genomic selection.

Authors:  Xiao-Lin Wu; Timothy M Beissinger; Stewart Bauck; Brent Woodward; Guilherme J M Rosa; Kent A Weigel; Natalia de Leon Gatti; Daniel Gianola
Journal:  Front Genet       Date:  2011-02-24       Impact factor: 4.599

  2 in total

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