Literature DB >> 17565764

Long-range distance determinations in biomacromolecules by EPR spectroscopy.

Olav Schiemann1, Thomas F Prisner.   

Abstract

Electron paramagnetic resonance (EPR) spectroscopy provides a variety of tools to study structures and structural changes of large biomolecules or complexes thereof. In order to unravel secondary structure elements, domain arrangements or complex formation, continuous wave and pulsed EPR methods capable of measuring the magnetic dipole coupling between two unpaired electrons can be used to obtain long-range distance constraints on the nanometer scale. Such methods yield reliably and precisely distances of up to 80 A, can be applied to biomolecules in aqueous buffer solutions or membranes, and are not size limited. They can be applied either at cryogenic or physiological temperatures and down to amounts of a few nanomoles. Spin centers may be metal ions, metal clusters, cofactor radicals, amino acid radicals, or spin labels. In this review, we discuss the advantages and limitations of the different EPR spectroscopic methods, briefly describe their theoretical background, and summarize important biological applications. The main focus of this article will be on pulsed EPR methods like pulsed electron-electron double resonance (PELDOR) and their applications to spin-labeled biosystems.

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Year:  2007        PMID: 17565764     DOI: 10.1017/S003358350700460X

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  134 in total

1.  Integrated analysis of the conformation of a protein-linked spin label by crystallography, EPR and NMR spectroscopy.

Authors:  Tim Gruene; Min-Kyu Cho; Irina Karyagina; Hai-Young Kim; Christian Grosse; Karin Giller; Markus Zweckstetter; Stefan Becker
Journal:  J Biomol NMR       Date:  2011-01-28       Impact factor: 2.835

2.  Stabilization of G domain conformations in the tRNA-modifying MnmE-GidA complex observed with double electron electron resonance spectroscopy.

Authors:  Sabine Böhme; Simon Meyer; André Krüger; Heinz-Jürgen Steinhoff; Alfred Wittinghofer; Johann P Klare
Journal:  J Biol Chem       Date:  2010-03-30       Impact factor: 5.157

3.  A combinatorial NMR and EPR approach for evaluating the structural ensemble of partially folded proteins.

Authors:  Jampani Nageswara Rao; Christine C Jao; Balachandra G Hegde; Ralf Langen; Tobias S Ulmer
Journal:  J Am Chem Soc       Date:  2010-06-30       Impact factor: 15.419

4.  An Integrated Spin-Labeling/Computational-Modeling Approach for Mapping Global Structures of Nucleic Acids.

Authors:  Narin S Tangprasertchai; Xiaojun Zhang; Yuan Ding; Kenneth Tham; Remo Rohs; Ian S Haworth; Peter Z Qin
Journal:  Methods Enzymol       Date:  2015-08-08       Impact factor: 1.600

5.  Doubly Spin-Labeled RNA as an EPR Reporter for Studying Multicomponent Supramolecular Assemblies.

Authors:  Alexey A Malygin; Dmitri M Graifer; Maria I Meschaninova; Aliya G Venyaminova; Olesya A Krumkacheva; Matvey V Fedin; Galina G Karpova; Elena G Bagryanskaya
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

6.  Protonation-dependent conformational dynamics of the multidrug transporter EmrE.

Authors:  Reza Dastvan; Axel W Fischer; Smriti Mishra; Jens Meiler; Hassane S Mchaourab
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

7.  DAC-board based X-band EPR spectrometer with arbitrary waveform control.

Authors:  Thomas Kaufmann; Timothy J Keller; John M Franck; Ryan P Barnes; Steffen J Glaser; John M Martinis; Songi Han
Journal:  J Magn Reson       Date:  2013-08-15       Impact factor: 2.229

8.  High-field EPR.

Authors:  Anton Savitsky; Klaus Möbius
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

9.  Conformation of receptor-bound visual arrestin.

Authors:  Miyeon Kim; Sergey A Vishnivetskiy; Ned Van Eps; Nathan S Alexander; Whitney M Cleghorn; Xuanzhi Zhan; Susan M Hanson; Takefumi Morizumi; Oliver P Ernst; Jens Meiler; Vsevolod V Gurevich; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

10.  PELDOR spectroscopy distance fingerprinting of the octameric outer-membrane protein Wza from Escherichia coli.

Authors:  Gregor Hagelueken; W John Ingledew; Hexian Huang; Biljana Petrovic-Stojanovska; Chris Whitfield; Hassane ElMkami; Olav Schiemann; James H Naismith
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

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