Literature DB >> 17565499

Searching for globally optimal functional forms for interatomic potentials using genetic programming with parallel tempering.

A Slepoy1, M D Peters, A P Thompson.   

Abstract

Molecular dynamics and other molecular simulation methods rely on a potential energy function, based only on the relative coordinates of the atomic nuclei. Such a function, called a force field, approximately represents the electronic structure interactions of a condensed matter system. Developing such approximate functions and fitting their parameters remains an arduous, time-consuming process, relying on expert physical intuition. To address this problem, a functional programming methodology was developed that may enable automated discovery of entirely new force-field functional forms, while simultaneously fitting parameter values. The method uses a combination of genetic programming, Metropolis Monte Carlo importance sampling and parallel tempering, to efficiently search a large space of candidate functional forms and parameters. The methodology was tested using a nontrivial problem with a well-defined globally optimal solution: a small set of atomic configurations was generated and the energy of each configuration was calculated using the Lennard-Jones pair potential. Starting with a population of random functions, our fully automated, massively parallel implementation of the method reproducibly discovered the original Lennard-Jones pair potential by searching for several hours on 100 processors, sampling only a minuscule portion of the total search space. This result indicates that, with further improvement, the method may be suitable for unsupervised development of more accurate force fields with completely new functional forms. Copyright (c) 2007 Wiley Periodicals, Inc.

Mesh:

Year:  2007        PMID: 17565499     DOI: 10.1002/jcc.20710

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  2 in total

1.  Identifying models of dielectric breakdown strength from high-throughput data via genetic programming.

Authors:  Fenglin Yuan; Tim Mueller
Journal:  Sci Rep       Date:  2017-12-14       Impact factor: 4.379

Review 2.  "Dividing and Conquering" and "Caching" in Molecular Modeling.

Authors:  Xiaoyong Cao; Pu Tian
Journal:  Int J Mol Sci       Date:  2021-05-10       Impact factor: 5.923

  2 in total

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