Literature DB >> 17565192

Crystallization and preliminary X-ray analysis of Atg10.

Masaya Yamaguti1, Nobuo N Suzuki, Yuko Fujioka, Yoshinori Ohsumi, Fuyuhiko Inagaki.   

Abstract

Atg10 is an E2-like enzyme that catalyzes the conjugation reaction between Atg12 and Atg5. The Atg12-Atg5 conjugate is essential for autophagy, the bulk degradation process of cytoplasmic components by the vacuolar/lysosomal system. Microcrystals of Saccharomyces cerevisiae Atg10 were obtained by the free-interface diffusion method using polyethylene glycol and sodium acetate as precipitants. Using these precipitants, large crystals suitable for data collection were obtained using the sitting-drop vapour-diffusion method. The crystals belong to space group P4(1)2(1)2 or P4(3)2(1)2, with unit-cell parameters a = b = 51.61, c = 256.16 A, and are estimated to contain two protein molecules per asymmetric unit. A native data set was collected to 2.3 A resolution from a single crystal.

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Year:  2007        PMID: 17565192      PMCID: PMC2335012          DOI: 10.1107/S1744309107017472

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

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Authors:  Y Ohsumi
Journal:  Nat Rev Mol Cell Biol       Date:  2001-03       Impact factor: 94.444

2.  Apg10p, a novel protein-conjugating enzyme essential for autophagy in yeast.

Authors:  T Shintani; N Mizushima; Y Ogawa; A Matsuura; T Noda; Y Ohsumi
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

3.  Structure of Atg5.Atg16, a complex essential for autophagy.

Authors:  Minako Matsushita; Nobuo N Suzuki; Keisuke Obara; Yuko Fujioka; Yoshinori Ohsumi; Fuyuhiko Inagaki
Journal:  J Biol Chem       Date:  2006-12-27       Impact factor: 5.157

Review 4.  Ubiquitin and ubiquitin-like proteins as multifunctional signals.

Authors:  Rebecca L Welchman; Colin Gordon; R John Mayer
Journal:  Nat Rev Mol Cell Biol       Date:  2005-08       Impact factor: 94.444

5.  The crystal structure of plant ATG12 and its biological implication in autophagy.

Authors:  Nobuo N Suzuki; Kohki Yoshimoto; Yuko Fujioka; Yoshinori Ohsumi; Fuyuhiko Inagaki
Journal:  Autophagy       Date:  2005-07-23       Impact factor: 16.016

6.  The ubiquitin system.

Authors:  A Varshavsky
Journal:  Trends Biochem Sci       Date:  1997-10       Impact factor: 13.807

7.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

8.  A ubiquitin-like system mediates protein lipidation.

Authors:  Y Ichimura; T Kirisako; T Takao; Y Satomi; Y Shimonishi; N Ishihara; N Mizushima; I Tanida; E Kominami; M Ohsumi; T Noda; Y Ohsumi
Journal:  Nature       Date:  2000-11-23       Impact factor: 49.962

9.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

10.  Apg7p/Cvt2p: A novel protein-activating enzyme essential for autophagy.

Authors:  I Tanida; N Mizushima; M Kiyooka; M Ohsumi; T Ueno; Y Ohsumi; E Kominami
Journal:  Mol Biol Cell       Date:  1999-05       Impact factor: 4.138

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  2 in total

1.  The Thermotolerant Yeast Kluyveromyces marxianus Is a Useful Organism for Structural and Biochemical Studies of Autophagy.

Authors:  Hayashi Yamamoto; Takayuki Shima; Masaya Yamaguchi; Yuh Mochizuki; Hisashi Hoshida; Soichiro Kakuta; Chika Kondo-Kakuta; Nobuo N Noda; Fuyuhiko Inagaki; Takehiko Itoh; Rinji Akada; Yoshinori Ohsumi
Journal:  J Biol Chem       Date:  2015-10-06       Impact factor: 5.157

2.  Differential Effects of Autophagy-Related 10 Protein on HCV Replication and Autophagy Flux Are Mediated by Its Cysteine44 and Cysteine135.

Authors:  Miao-Qing Zhang; Jian-Rui Li; Zong-Gen Peng; Jing-Pu Zhang
Journal:  Front Immunol       Date:  2018-09-24       Impact factor: 7.561

  2 in total

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