Literature DB >> 17559873

Structure and mechanism of HpcG, a hydratase in the homoprotocatechuate degradation pathway of Escherichia coli.

Atsushi Izumi1, Dean Rea, Tomoko Adachi, Satoru Unzai, Sam-Yong Park, David I Roper, Jeremy R H Tame.   

Abstract

HpcG catalyses the hydration of a carbon-carbon double bond without the aid of any cofactor other than a simple divalent metal ion such as Mg(2+). Since the substrate has a nearby carbonyl group, it is believed that it first isomerises to form a pair of conjugated double bonds in the enol tautomer before Michael addition of water. Previous chemical studies of the reaction, and that of the related enzyme MhpD, have failed to provide a clear picture of the mechanism. The substrate itself is unstable, preventing co-crystallisation or soaking of crystals, but oxalate is a strong competitive inhibitor. We have solved the crystal structure of the protein in the apo form, and with magnesium and oxalate bound. Modelling substrate into the active site suggests the attacking water molecule is not part of the metal coordination shell, in contrast to a previous proposal. Our model suggests that geometrically strained cis isomer intermediates do not lie on the reaction pathway, and that separate groups are involved in the isomerisation and hydration steps.

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Year:  2007        PMID: 17559873     DOI: 10.1016/j.jmb.2007.05.006

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  5 in total

1.  Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover a Structural Basis for the Metal-Assisted Decarboxylation of a Vinylogous β-Keto Acid.

Authors:  Samuel L Guimarães; Juliana B Coitinho; Débora M A Costa; Simara S Araújo; Christian P Whitman; Ronaldo A P Nagem
Journal:  Biochemistry       Date:  2016-04-27       Impact factor: 3.162

2.  Structural and Kinetic Characterization of the 4-Carboxy-2-hydroxymuconate Hydratase from the Gallate and Protocatechuate 4,5-Cleavage Pathways of Pseudomonas putida KT2440.

Authors:  Scott Mazurkewich; Ashley S Brott; Matthew S Kimber; Stephen Y K Seah
Journal:  J Biol Chem       Date:  2016-02-11       Impact factor: 5.157

3.  Stereochemical Consequences of Vinylpyruvate Hydratase-Catalyzed Reactions.

Authors:  William H Johnson; Tyler M M Stack; Stephanie M Taylor; Elizabeth A Burks; Christian P Whitman
Journal:  Biochemistry       Date:  2016-07-12       Impact factor: 3.162

4.  Expression, Purification, Crystallization, and Enzyme Assays of Fumarylacetoacetate Hydrolase Domain-Containing Proteins.

Authors:  Alexander K H Weiss; Max Holzknecht; Elia Cappuccio; Ilaria Dorigatti; Karin Kreidl; Andreas Naschberger; Bernhard Rupp; Hubert Gstach; Pidder Jansen-Dürr
Journal:  J Vis Exp       Date:  2019-06-20       Impact factor: 1.355

5.  Cordyceps sinensis-mediated biotransformation of notoginsenoside R1 into 25-OH-20(S/R)-R2 with elevated cardioprotective effect against DOX-induced cell injury.

Authors:  Jishuang Liu; Yu Xin; Zhidong Qiu; Qi Zhang; Tianzhu He; Ye Qiu; Weinan Wang
Journal:  RSC Adv       Date:  2022-04-28       Impact factor: 4.036

  5 in total

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