Literature DB >> 17558412

Recombinant RNA technology: the tRNA scaffold.

Luc Ponchon1, Frédéric Dardel.   

Abstract

RNA has emerged as a major player in most cellular processes. Understanding these processes at the molecular level requires homogeneous RNA samples for structural, biochemical and pharmacological studies. So far, this has been a bottleneck, as the only methods for producing such pure RNA have been in vitro syntheses. Here we describe a generic approach for expressing and purifying structured RNA in Escherichia coli, using tools that parallel those available for recombinant proteins. Our system is based on a camouflage strategy, the 'tRNA scaffold', in which the recombinant RNA is disguised as a natural RNA and thus hijacks the host machinery, escaping cellular RNases. This opens the way to large-scale structural and molecular investigations of RNA function.

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Year:  2007        PMID: 17558412     DOI: 10.1038/nmeth1058

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  92 in total

1.  Single-Cell Microscopy Reveals That Levels of Cyclic di-GMP Vary among Bacillus subtilis Subpopulations.

Authors:  Cordelia A Weiss; Jakob A Hoberg; Kuanqing Liu; Benjamin P Tu; Wade C Winkler
Journal:  J Bacteriol       Date:  2019-07-24       Impact factor: 3.490

2.  A generic protocol for the expression and purification of recombinant RNA in Escherichia coli using a tRNA scaffold.

Authors:  Luc Ponchon; Geneviève Beauvais; Sylvie Nonin-Lecomte; Frédéric Dardel
Journal:  Nat Protoc       Date:  2009-05-28       Impact factor: 13.491

3.  Ribosome hijacking: a role for small protein B during trans-translation.

Authors:  Sylvie Nonin-Lecomte; Noella Germain-Amiot; Reynald Gillet; Marc Hallier; Luc Ponchon; Frédéric Dardel; Brice Felden
Journal:  EMBO Rep       Date:  2009-01-09       Impact factor: 8.807

4.  Chimeric MicroRNA-1291 Biosynthesized Efficiently in Escherichia coli Is Effective to Reduce Target Gene Expression in Human Carcinoma Cells and Improve Chemosensitivity.

Authors:  Mei-Mei Li; Balasubrahmanyam Addepalli; Mei-Juan Tu; Qiu-Xia Chen; Wei-Peng Wang; Patrick A Limbach; Janine M LaSalle; Su Zeng; Min Huang; Ai-Ming Yu
Journal:  Drug Metab Dispos       Date:  2015-05-01       Impact factor: 3.922

5.  Extracellular production of an RNA aptamer by ribonuclease-free marine bacteria harboring engineered plasmids: a proposal for industrial RNA drug production.

Authors:  Hiromichi Suzuki; Tomoaki Ando; So Umekage; Terumichi Tanaka; Yo Kikuchi
Journal:  Appl Environ Microbiol       Date:  2009-12-04       Impact factor: 4.792

6.  Dual-colour imaging of RNAs using quencher- and fluorophore-binding aptamers.

Authors:  Ankita Arora; Murat Sunbul; Andres Jäschke
Journal:  Nucleic Acids Res       Date:  2015-07-14       Impact factor: 16.971

7.  In-gel imaging of RNA processing using broccoli reveals optimal aptamer expression strategies.

Authors:  Grigory S Filonov; Christina W Kam; Wenjiao Song; Samie R Jaffrey
Journal:  Chem Biol       Date:  2015-05-21

8.  The cellular environment stabilizes adenine riboswitch RNA structure.

Authors:  Jillian Tyrrell; Jennifer L McGinnis; Kevin M Weeks; Gary J Pielak
Journal:  Biochemistry       Date:  2013-11-20       Impact factor: 3.162

9.  Selection of Intracellularly Functional RNA Mimics of Green Fluorescent Protein Using Fluorescence-Activated Cell Sorting.

Authors:  Jiawei Zou; Xin Huang; Lei Wu; Gangyi Chen; Juan Dong; Xin Cui; Zhuo Tang
Journal:  J Mol Evol       Date:  2015-11-14       Impact factor: 2.395

10.  Preparation of selective and segmentally labeled single-stranded DNA for NMR by self-primed PCR and asymmetrical endonuclease double digestion.

Authors:  Frank H T Nelissen; Frederic C Girard; Marco Tessari; Hans A Heus; Sybren S Wijmenga
Journal:  Nucleic Acids Res       Date:  2009-06-24       Impact factor: 16.971

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