Literature DB >> 17556710

Adipocyte differentiation induced using nonspecific siRNA controls in cultured human mesenchymal stem cells.

Yunhe Xu1, Sayed-Hadi Mirmalek-Sani, Feng Lin, Junlong Zhang, Richard O C Oreffo.   

Abstract

RNA interference (RNAi) is gene silencing induced by double-stranded RNA of 21-23 nucleotides in length, termed small interfering RNA, or siRNA. RNAi-based techniques have been widely applied to elucidate gene function, identify drug targets, and used in trials as a promising adjunct to silence disease-causing genes. However, emerging evidence suggests unexpected changes in expression of untargeted genes as a consequence of an off-target effect by RNAi in mammalian cells. To date, our understanding of such effects on stem cells is limited. We transfected human fetal femur-derived mesenchymal stem cells using commercially available nonspecific siRNA controls and examined adipocyte differentiation in the cells using morphology, histochemistry, and quantitative real-time PCR to examine the expression of key genes for adipogenic or osteogenic differentiation. We report here the induction of adipocyte differentiation in human mesenchymal stem cells using nonspecific siRNAs raising concerns as to the specificity of RNAi in stem cells and, critically, a need to understand and delineate the rules governing the specificity of RNAi.

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Year:  2007        PMID: 17556710      PMCID: PMC1924906          DOI: 10.1261/rna.527207

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  30 in total

1.  RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.

Authors:  P D Zamore; T Tuschl; P A Sharp; D P Bartel
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

2.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

3.  siRNA-directed inhibition of HIV-1 infection.

Authors:  Carl D Novina; Michael F Murray; Derek M Dykxhoorn; Paul J Beresford; Jonathan Riess; Sang-Kyung Lee; Ronald G Collman; Judy Lieberman; Premlata Shankar; Phillip A Sharp
Journal:  Nat Med       Date:  2002-06-03       Impact factor: 53.440

4.  Specificity of short interfering RNA determined through gene expression signatures.

Authors:  Dimitri Semizarov; Leigh Frost; Aparna Sarthy; Paul Kroeger; Donald N Halbert; Stephen W Fesik
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-13       Impact factor: 11.205

5.  Expression profiling reveals off-target gene regulation by RNAi.

Authors:  Aimee L Jackson; Steven R Bartz; Janell Schelter; Sumire V Kobayashi; Julja Burchard; Mao Mao; Bin Li; Guy Cavet; Peter S Linsley
Journal:  Nat Biotechnol       Date:  2003-05-18       Impact factor: 54.908

6.  Many commonly used siRNAs risk off-target activity.

Authors:  Ola Snøve; Torgeir Holen
Journal:  Biochem Biophys Res Commun       Date:  2004-06-18       Impact factor: 3.575

7.  Determinants of interferon-stimulated gene induction by RNAi vectors.

Authors:  Stephanie Pebernard; Richard D Iggo
Journal:  Differentiation       Date:  2004-03       Impact factor: 3.880

Review 8.  Mesenchymal stem cells: lineage, plasticity, and skeletal therapeutic potential.

Authors:  Richard O C Oreffo; Cyrus Cooper; Christopher Mason; Mark Clements
Journal:  Stem Cell Rev       Date:  2005       Impact factor: 5.739

9.  Induction of an interferon response by RNAi vectors in mammalian cells.

Authors:  Alan J Bridge; Stephanie Pebernard; Annick Ducraux; Anne-Laure Nicoulaz; Richard Iggo
Journal:  Nat Genet       Date:  2003-07       Impact factor: 38.330

10.  Stable suppression of tumorigenicity by virus-mediated RNA interference.

Authors:  Thijn R Brummelkamp; René Bernards; Reuven Agami
Journal:  Cancer Cell       Date:  2002-09       Impact factor: 31.743

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  8 in total

1.  siRNA nanoparticle functionalization of nanostructured scaffolds enables controlled multilineage differentiation of stem cells.

Authors:  Morten Ø Andersen; Jens V Nygaard; Jorge S Burns; Merete K Raarup; Jens R Nyengaard; Cody Bünger; Flemming Besenbacher; Kenneth A Howard; Moustapha Kassem; Jørgen Kjems
Journal:  Mol Ther       Date:  2010-08-31       Impact factor: 11.454

2.  High glucose induces adipogenic differentiation of muscle-derived stem cells.

Authors:  Paola Aguiari; Sara Leo; Barbara Zavan; Vincenzo Vindigni; Alessandro Rimessi; Katiuscia Bianchi; Chiara Franzin; Roberta Cortivo; Marco Rossato; Roberto Vettor; Giovanni Abatangelo; Tullio Pozzan; Paolo Pinton; Rosario Rizzuto
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-22       Impact factor: 11.205

3.  Inhibition of latent transforming growth factor-beta1 activation by lentivirus-mediated short hairpin RNA targeting the CD36 gene in NR8383 cells.

Authors:  Xin Wang; Ying Chen; Lina Lv; Jie Chen
Journal:  Mol Biol Rep       Date:  2009-06-10       Impact factor: 2.316

4.  Multimodal Label-Free Monitoring of Adipogenic Stem Cell Differentiation Using Endogenous Optical Biomarkers.

Authors:  Nishir Mehta; Shahensha Shaik; Alisha Prasad; Ardalan Chaichi; Sushant P Sahu; Qianglin Liu; Syed Mohammad Abid Hasan; Elnaz Sheikh; Fabrizio Donnarumma; Kermit K Murray; Xing Fu; Ram Devireddy; Manas Ranjan Gartia
Journal:  Adv Funct Mater       Date:  2021-08-06       Impact factor: 19.924

5.  Regionally-derived cell populations and skeletal stem cells from human foetal femora exhibit specific osteochondral and multi-lineage differentiation capacity in vitro and ex vivo.

Authors:  David Gothard; Kelvin Cheung; Janos M Kanczler; David I Wilson; Richard O C Oreffo
Journal:  Stem Cell Res Ther       Date:  2015-12-18       Impact factor: 6.832

6.  Evaluating side effects of nanoparticle-mediated siRNA delivery to mesenchymal stem cells using next generation sequencing and enrichment analysis.

Authors:  Dominic W Malcolm; Janet E Sorrells; Daniel Van Twisk; Juilee Thakar; Danielle S W Benoit
Journal:  Bioeng Transl Med       Date:  2016-10-24

7.  Induction of osteogenic differentiation of stem cells via a lyophilized microRNA reverse transfection formulation on a tissue culture plate.

Authors:  Kaimin Wu; Jie Xu; Mengyuan Liu; Wen Song; Jun Yan; Shan Gao; Lingzhou Zhao; Yumei Zhang
Journal:  Int J Nanomedicine       Date:  2013-05-03

8.  Tracking adipogenic differentiation of skeletal stem cells by label-free chemically selective imaging.

Authors:  Justyna P Smus; Catarina Costa Moura; Emma McMorrow; Rahul S Tare; Richard O C Oreffo; Sumeet Mahajan
Journal:  Chem Sci       Date:  2015-09-09       Impact factor: 9.825

  8 in total

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