Literature DB >> 17555305

Application of the computationally efficient self-consistent-charge density-functional tight-binding method to magnesium-containing molecules.

Zheng-Li Cai1, Philip Lopez, Jeffrey R Reimers, Qiang Cui, Marcus Elstner.   

Abstract

The geometric properties, ionization potentials, heats of formation, incremental binding energies, and protonation energies for up to 75 magnesium-containing compounds have been studied using the self-consistent-charge density-functional tight-binding method (SCC-DFTB), the complete-basis set (CBS-QB3) method, traditional B3LYP density-functional theory, and a number of modern semiempirical methods such as Austin Model 1 (AM1), modified neglect of diatomic overlap without and with inclusion of d functions (MNDO, MNDO/d), and the Parametric Method 3 (PM3) and its modification (PM5). The test set contains some widely varying chemical motifs including ionic or covalent, closed-shell or radical compounds, and many biologically relevant complexes. Geometric data are compared to experiment, if available, and otherwise to previous high-level ab initio calculations or the present B3LYP results. SCC-DFTB is found to predict bond lengths to high accuracy, with the root-mean-square (RMS) error being less than half that found for the other semiempirical methods. However, SCC-DFTB performs very poorly for absolute heats of formation, giving an RMS error of 29 kcal mol(-1), but for this property B3LYP and the other semiempirical methods also yield poor but useful results with errors of 12-22 kcal mol(-1). Nevertheless, SCC-DFTB does provide useful results for biologically relevant chemical-process energies such as protonation energies (RMS error 10 kcal mol(-1), with the range 6-19 kcal mol(-1) found for the other semiempirical methods) and ligation energies (RMS error 9 kcal mol(-1), less than the errors of 12-23 kcal mol(-1) found for the other semiempirical methods). SCC-DFTB is shown to provide a computationally expedient means of calculating properties of magnesium compounds, providing results with at most double the inaccuracy of the high-quality but dramatically more-expensive B3LYP method.

Entities:  

Year:  2007        PMID: 17555305     DOI: 10.1021/jp071701m

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  Density-functional expansion methods: generalization of the auxiliary basis.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2011-05-21       Impact factor: 3.488

Review 2.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

3.  A modified QM/MM Hamiltonian with the Self-Consistent-Charge Density-Functional-Tight-Binding Theory for highly charged QM regions.

Authors:  Guanhua Hou; Xiao Zhu; Marcus Elstner; Qiang Cui
Journal:  J Chem Theory Comput       Date:  2012-11-13       Impact factor: 6.006

4.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

5.  An implicit solvent model for SCC-DFTB with Charge-Dependent Radii.

Authors:  Guanhua Hou; Xiao Zhu; Qiang Cui
Journal:  J Chem Theory Comput       Date:  2010-08-10       Impact factor: 6.006

6.  Parametrization of DFTB3/3OB for magnesium and zinc for chemical and biological applications.

Authors:  Xiya Lu; Michael Gaus; Marcus Elstner; Qiang Cui
Journal:  J Phys Chem B       Date:  2014-09-16       Impact factor: 2.991

7.  Parameterization of DFTB3/3OB for Sulfur and Phosphorus for Chemical and Biological Applications.

Authors:  Michael Gaus; Xiya Lu; Marcus Elstner; Qiang Cui
Journal:  J Chem Theory Comput       Date:  2014-03-12       Impact factor: 6.006

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.