Literature DB >> 17554173

Crystallization and preliminary X-ray analysis of the complex between a Bacillus subtilis alpha/beta-type small acid-soluble spore protein and DNA.

Daniela Bumbaca1, Jeffrey Kosman, Peter Setlow, R Keith Henderson, Mark J Jedrzejas.   

Abstract

An engineered variant of an alpha/beta-type small acid-soluble spore protein (SASP) from Bacillus subtilis was crystallized in a complex with a ten-base-pair double-stranded DNA by the hanging-drop vapor-diffusion method using ammonium sulfate as a precipitating agent. Crystals grew at 281 K using sodium cacodylate buffer pH 5.5 and these crystals diffracted X-rays to beyond 2.4 A resolution using synchrotron radiation. The crystallized complex contains two or three SASP molecules bound to one DNA molecule. The crystals belong to the hexagonal space group P6(1)22 or P6(5)22, with unit-cell parameters a = b = 87.0, c = 145.4 A, alpha = beta = 90.0, gamma = 120.0 degrees. Diffraction data were 96.6% complete to 2.4 A resolution, with an R(sym) of 8.5%. Structure solution by the multiwavelength/single-wavelength anomalous dispersion method using isomorphous crystals of selenomethionine-labeled protein is in progress.

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Year:  2007        PMID: 17554173      PMCID: PMC2335083          DOI: 10.1107/S1744309107022750

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

1.  An alpha/beta-type, small, acid-soluble spore protein which has very high affinity for DNA prevents outgrowth of Bacillus subtilis spores.

Authors:  C S Hayes; P Setlow
Journal:  J Bacteriol       Date:  2001-04       Impact factor: 3.490

2.  Equilibrium and kinetic binding interactions between DNA and a group of novel, nonspecific DNA-binding proteins from spores of Bacillus and Clostridium species.

Authors:  C S Hayes; Z Y Peng; P Setlow
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

Review 3.  Spore germination.

Authors:  Peter Setlow
Journal:  Curr Opin Microbiol       Date:  2003-12       Impact factor: 7.934

4.  Automated structure solution, density modification and model building.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

5.  Structure of the DNA-SspC complex: implications for DNA packaging, protection, and repair in bacterial spores.

Authors:  Daphna Frenkiel-Krispin; Rinat Sack; Joseph Englander; Eyal Shimoni; Miriam Eisenstein; Esther Bullitt; Rachel Horowitz-Scherer; Christopher S Hayes; Peter Setlow; Abraham Minsky; Sharon Grayer Wolf
Journal:  J Bacteriol       Date:  2004-06       Impact factor: 3.490

6.  N-terminal amino acid residues mediate protein-protein interactions between DNA-bound alpha /beta -type small, acid-soluble spore proteins from Bacillus species.

Authors:  C S Hayes; E Alarcon-Hernandez; P Setlow
Journal:  J Biol Chem       Date:  2000-10-23       Impact factor: 5.157

7.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

8.  Interaction between DNA and alpha/beta-type small, acid-soluble spore proteins: a new class of DNA-binding protein.

Authors:  B Setlow; D Sun; P Setlow
Journal:  J Bacteriol       Date:  1992-04       Impact factor: 3.490

9.  Effects of carboxy-terminal modifications and pH on binding of a Bacillus subtilis small, acid-soluble spore protein to DNA.

Authors:  Jeffrey Kosman; Peter Setlow
Journal:  J Bacteriol       Date:  2003-10       Impact factor: 3.490

10.  Automated main-chain model building by template matching and iterative fragment extension.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19
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  6 in total

1.  Structure of a protein-DNA complex essential for DNA protection in spores of Bacillus species.

Authors:  Ki Seog Lee; Daniela Bumbaca; Jeffrey Kosman; Peter Setlow; Mark J Jedrzejas
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-19       Impact factor: 11.205

Review 2.  Mechanistic studies of the radical SAM enzyme spore photoproduct lyase (SPL).

Authors:  Lei Li
Journal:  Biochim Biophys Acta       Date:  2011-12-08

3.  Effect of a small, acid-soluble spore protein from Clostridium perfringens on the resistance properties of Bacillus subtilis spores.

Authors:  Juan Francisco Leyva-Illades; Barbara Setlow; Mahfuzur R Sarker; Peter Setlow
Journal:  J Bacteriol       Date:  2007-08-31       Impact factor: 3.490

4.  Mechanistic studies of the spore photoproduct lyase via a single cysteine mutation.

Authors:  Linlin Yang; Gengjie Lin; Renae S Nelson; Yajun Jian; Joshua Telser; Lei Li
Journal:  Biochemistry       Date:  2012-08-31       Impact factor: 3.162

Review 5.  Photochemistry and Photobiology of the Spore Photoproduct: A 50-Year Journey.

Authors:  Peter Setlow; Lei Li
Journal:  Photochem Photobiol       Date:  2015-09-20       Impact factor: 3.421

6.  The enzyme-mediated direct reversal of a dithymine photoproduct in germinating endospores.

Authors:  Linlin Yang; Lei Li
Journal:  Int J Mol Sci       Date:  2013-06-25       Impact factor: 5.923

  6 in total

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