Literature DB >> 17554166

Crystallization and crystal properties of squid rhodopsin.

Midori Murakami1, Rei Kitahara, Toshiaki Gotoh, Tsutomu Kouyama.   

Abstract

Rhodopsin, a photoreceptor membrane protein in the retina, is a prototypical member of the G-protein-coupled receptor family. In this study, rhodopsin from the retina of the squid Todarodes pacificus was treated with V8 protease to remove the C-terminal extension. Truncated rhodopsin was selectively extracted from the microvillar membranes using alkyl glucoside in the presence of zinc ions and was then crystallized by the sitting-drop vapour-diffusion method. Of the various crystals obtained, hexagonal crystals grown in the presence of octylglucoside and ammonium sulfate diffracted to 2.8 A resolution. The diffraction data suggested that the crystal belongs to space group P6(2), with unit-cell parameters a = b = 122.1, c = 158.6 A. Preliminary crystallographic analysis, together with linear dichroism results, suggested that the rhodopsin dimers are packed in such a manner that their transmembrane helices are aligned nearly parallel to the c axis.

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Year:  2007        PMID: 17554166      PMCID: PMC2335087          DOI: 10.1107/S1744309107017423

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  23 in total

1.  Diversity of visual pigments from the viewpoint of G protein activation--comparison with other G protein-coupled receptors.

Authors:  Yoshinori Shichida; Takahiro Yamashita
Journal:  Photochem Photobiol Sci       Date:  2003-12       Impact factor: 3.982

2.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

3.  Selective activation of G-protein subtypes by vertebrate and invertebrate rhodopsins.

Authors:  A Terakita; T Yamashita; S Tachibanaki; Y Shichida
Journal:  FEBS Lett       Date:  1998-11-13       Impact factor: 4.124

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Detecting and overcoming crystal twinning.

Authors:  T O Yeates
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

6.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

7.  Identification of conserved lipid/detergent-binding sites in a high-resolution structure of the membrane protein cytochrome c oxidase.

Authors:  Ling Qin; Carrie Hiser; Anne Mulichak; R Michael Garavito; Shelagh Ferguson-Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

Review 8.  Transduction mechanisms of vertebrate and invertebrate photoreceptors.

Authors:  S Yarfitz; J B Hurley
Journal:  J Biol Chem       Date:  1994-05-20       Impact factor: 5.157

9.  Highly selective separation of rhodopsin from bovine rod outer segment membranes using combination of divalent cation and alkyl(thio)glucoside.

Authors:  T Okada; K Takeda; T Kouyama
Journal:  Photochem Photobiol       Date:  1998-05       Impact factor: 3.421

10.  Cloning and nucleotide sequence of cDNA for rhodopsin of the squid Todarodes pacificus.

Authors:  I Hara-Nishimura; M Kondo; M Nishimura; R Hara; T Hara
Journal:  FEBS Lett       Date:  1993-02-08       Impact factor: 4.124

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  4 in total

1.  Analysis of Conserved Glutamate and Aspartate Residues in Drosophila Rhodopsin 1 and Their Influence on Spectral Tuning.

Authors:  Lijun Zheng; David M Farrell; Ruth M Fulton; Eve E Bagg; Ernesto Salcedo; Meridee Manino; Steven G Britt
Journal:  J Biol Chem       Date:  2015-07-20       Impact factor: 5.157

2.  Crystallographic Study of the LUMI Intermediate of Squid Rhodopsin.

Authors:  Midori Murakami; Tsutomu Kouyama
Journal:  PLoS One       Date:  2015-05-29       Impact factor: 3.240

3.  The Two-Photon Reversible Reaction of the Bistable Jumping Spider Rhodopsin-1.

Authors:  David Ehrenberg; Niranjan Varma; Xavier Deupi; Mitsumasa Koyanagi; Akihisa Terakita; Gebhard F X Schertler; Joachim Heberle; Elena Lesca
Journal:  Biophys J       Date:  2019-03-05       Impact factor: 4.033

4.  Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region.

Authors:  Tatsuro Shimamura; Kenji Hiraki; Naoko Takahashi; Tetsuya Hori; Hideo Ago; Katsuyoshi Masuda; Koji Takio; Masaji Ishiguro; Masashi Miyano
Journal:  J Biol Chem       Date:  2008-05-06       Impact factor: 5.157

  4 in total

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