Literature DB >> 17553959

Selectivity and proofreading both contribute significantly to the fidelity of RNA polymerase III transcription.

Nazif Alic1, Nayla Ayoub, Emilie Landrieux, Emmanuel Favry, Peggy Baudouin-Cornu, Michel Riva, Christophe Carles.   

Abstract

We examine here the mechanisms ensuring the fidelity of RNA synthesis by RNA polymerase III (Pol III). Misincorporation could only be observed by using variants of Pol III deficient in the intrinsic RNA cleavage activity. Determination of relative rates of the reactions producing correct and erroneous transcripts at a specific position on a tRNA gene, combined with computational methods, demonstrated that Pol III has a highly efficient proofreading activity increasing its transcriptional fidelity by a factor of 10(3) over the error rate determined solely by selectivity (1.8 x 10(-4)). We show that Pol III slows down synthesis past a misincorporation to achieve efficient proofreading. We discuss our findings in the context of transcriptional fidelity studies performed on RNA Pols, proposing that the fidelity of transcription is more crucial for Pol III than Pol II.

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Year:  2007        PMID: 17553959      PMCID: PMC1965525          DOI: 10.1073/pnas.0704116104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

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Journal:  Mol Cell       Date:  2002-04       Impact factor: 17.970

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Journal:  Structure       Date:  2003-05       Impact factor: 5.006

Review 4.  Promoting elongation with transcript cleavage stimulatory factors.

Authors:  Rachel N Fish; Caroline M Kane
Journal:  Biochim Biophys Acta       Date:  2002-09-13

5.  Transcription elongation factor S-II maintains transcriptional fidelity and confers oxidative stress resistance.

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Journal:  Genes Cells       Date:  2003-10       Impact factor: 1.891

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Journal:  J Biol Chem       Date:  2002-05-02       Impact factor: 5.157

7.  Allosteric binding of nucleoside triphosphates to RNA polymerase regulates transcription elongation.

Authors:  J E Foster; S F Holmes; D A Erie
Journal:  Cell       Date:  2001-07-27       Impact factor: 41.582

8.  Unified two-metal mechanism of RNA synthesis and degradation by RNA polymerase.

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Authors:  Damien Brégeon; Zara A Doddridge; Ho Jin You; Bernard Weiss; Paul W Doetsch
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  20 in total

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2.  Divergent contributions of conserved active site residues to transcription by eukaryotic RNA polymerases I and II.

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Journal:  Genes Dev       Date:  2008-07-15       Impact factor: 11.361

4.  The C53/C37 subcomplex of RNA polymerase III lies near the active site and participates in promoter opening.

Authors:  George A Kassavetis; Prachee Prakash; Eunjung Shim
Journal:  J Biol Chem       Date:  2009-11-24       Impact factor: 5.157

5.  Evolution of two modes of intrinsic RNA polymerase transcript cleavage.

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Journal:  J Biol Chem       Date:  2011-03-23       Impact factor: 5.157

6.  Distinguishing core and holoenzyme mechanisms of transcription termination by RNA polymerase III.

Authors:  Aneeshkumar G Arimbasseri; Richard J Maraia
Journal:  Mol Cell Biol       Date:  2013-02-11       Impact factor: 4.272

Review 7.  Methods for Optimizing CRISPR-Cas9 Genome Editing Specificity.

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Review 8.  Multisubunit DNA-Dependent RNA Polymerases from Vaccinia Virus and Other Nucleocytoplasmic Large-DNA Viruses: Impressions from the Age of Structure.

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Journal:  Microbiol Mol Biol Rev       Date:  2017-07-12       Impact factor: 11.056

9.  Crucial role of a dicarboxylic motif in the catalytic center of yeast RNA polymerases.

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Journal:  Curr Genet       Date:  2011-07-15       Impact factor: 3.886

10.  RNA polymerase I structure and transcription regulation.

Authors:  Christoph Engel; Sarah Sainsbury; Alan C Cheung; Dirk Kostrewa; Patrick Cramer
Journal:  Nature       Date:  2013-10-23       Impact factor: 49.962

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