Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Literature DB >> 17553858

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Abstract

UNLABELLED: The MiSink Plugin converts Cytoscape, an open-source bioinformatics platform for network visualization, to a graphical interface for the database of interacting proteins (DIP: http://dip.doe-mbi.ucla.edu). Seamless integration is possible by providing bi-directional communication between Cytoscape and any Web site supplying data in XML or tab-delimited format. AVAILABILITY: MiSink is freely available for download at http://dip.doe-mbi.ucla.edu/Software.cgi.

Mesh：

Year: 2007 PMID： 17553858 DOI： 10.1093/bioinformatics/btm304

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

Keyword Cloud
Cited

7 in total

1. Flexible network reconstruction from relational databases with Cytoscape and CytoSQL.

Authors: Kris Laukens; Jens Hollunder; Thanh Hai Dang; Geert De Jaeger; Martin Kuiper; Erwin Witters; Alain Verschoren; Koenraad Van Leemput
Journal: BMC Bioinformatics Date: 2010-07-01 Impact factor: 3.169

2. Integration of biological networks and gene expression data using Cytoscape.

Authors: Melissa S Cline; Michael Smoot; Ethan Cerami; Allan Kuchinsky; Nerius Landys; Chris Workman; Rowan Christmas; Iliana Avila-Campilo; Michael Creech; Benjamin Gross; Kristina Hanspers; Ruth Isserlin; Ryan Kelley; Sarah Killcoyne; Samad Lotia; Steven Maere; John Morris; Keiichiro Ono; Vuk Pavlovic; Alexander R Pico; Aditya Vailaya; Peng-Liang Wang; Annette Adler; Bruce R Conklin; Leroy Hood; Martin Kuiper; Chris Sander; Ilya Schmulevich; Benno Schwikowski; Guy J Warner; Trey Ideker; Gary D Bader
Journal: Nat Protoc Date: 2007 Impact factor: 13.491

3. Integrating and annotating the interactome using the MiMI plugin for cytoscape.

Authors: Jing Gao; Alex S Ade; V Glenn Tarcea; Terry E Weymouth; Barbara R Mirel; H V Jagadish; David J States
Journal: Bioinformatics Date: 2008-09-23 Impact factor: 6.937

4. GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.

Authors: Marie E Fahey; Melanie J Bennett; Cathal Mahon; Stefanie Jäger; Lars Pache; Dhiraj Kumar; Alex Shapiro; Kanury Rao; Sumit K Chanda; Charles S Craik; Alan D Frankel; Nevan J Krogan
Journal: BMC Bioinformatics Date: 2011-07-22 Impact factor: 3.307

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

1. Flexible network reconstruction from relational databases with Cytoscape and CytoSQL.

2. Integration of biological networks and gene expression data using Cytoscape.

3. Integrating and annotating the interactome using the MiMI plugin for cytoscape.

4. GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.

5. OntoSlug: a dynamic visual front-end program for ontologies.

6. iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data.

7. Public databases and software for the pathway analysis of cancer genomes.