| Literature DB >> 17553267 |
Aleksandr S Lipatov1, Vasily A Evseenko, Hui-Ling Yen, Anna V Zaykovskaya, Alexander G Durimanov, Sergey I Zolotykh, Sergey V Netesov, Ilya G Drozdov, Gennadiy G Onishchenko, Robert G Webster, Alexander M Shestopalov.
Abstract
We studied 7 influenza (H5N1) viruses isolated from poultry in western Siberia and the European part of the Russian Federation during July 2005-February 2006. Full genome sequences showed high homology to Qinghai-like influenza (H5N1) viruses. Phylogenetic analysis not only showed a close genetic relationship between the H5N1 strains isolated from poultry and wild migratory waterfowls but also suggested genetic reassortment among the analyzed isolates. Analysis of deduced amino acid sequences of the M2 and neuraminidase proteins showed that all isolates are potentially sensitive to currently available antiviral drugs. Pathogenicity testing showed that all studied viruses were highly pathogenic in chickens; for 3 isolates tested in mice and 2 tested in ferrets, pathogenicity was heterogeneous. Pathogenicity in mammalian models was generally correlated with Lys at residue 627 of polymerase basic protein 2.Entities:
Mesh:
Year: 2007 PMID: 17553267 PMCID: PMC2725974 DOI: 10.3201/eid1304.061266
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Figure 1Spread of influenza (H5N1) in the Russian Federation, 2005–2006. Locations and dates of outbreaks of disease in poultry and wild waterfowl (1 outbreak in mute swans, Astrakhan region, Nov 2005) investigated by Federal State Research Institute Research Center for Virology and Biotechnology “Vector.”
Influenza (H5N1) viruses, Russian Federation, 2005–2006
| Virus | Date of isolation | Type of operation | Specimen used for isolation | IVPI for chickens* |
|---|---|---|---|---|
| A/chicken/Suzdalka/06/2005 | Jul 22, 2005 | Backyard flock | Dead chicken (spleen) | 3.0 |
| A/goose/Suzdalka/10/2005 | Jul 22, 2005 | Backyard flock | Dead goose (lungs) | 3.0 |
| A/turkey/Suzdalka/12/2005 | Jul 22, 2005 | Backyard flock | Sick turkey (cloacal swabs) | 3.0 |
| A/chicken/Omsk/14/2005 | Aug 12, 2005 | Backyard flock | Sick chicken (cloacal swabs) | 2.6 |
| A/chicken/Tula/4/2005 | Oct 5, 2005 | Backyard flock | Dead chicken (lungs) | 2.8 |
| A/goose/Krasnoozerskoye/627/2005 | Oct 17, 2005 | Goose farm (~5,000 geese) | Sick goose (cloacal swabs) | 3.0 |
| A/chicken/Krasnodar/123/2006 | Feb 12, 2006 | Chicken farm (~300,000 chickens) | Dead chicken (lungs) | 3.0 |
*IVPI, intravenous pathogenicity index.
Figure 2Phylogenetic relationships of the hemagglutinin (HA) (A), neuraminidase (NA) (B), polymerase basic protein 2 (PB2) (C), and nonstructural (NS) (D) genes of the 7 influenza (H5N1) viruses. Nucleotide sequences were analyzed by using the neighbor-joining method with 100 bootstraps. The HA phylogenetic tree was rooted to the HA gene of A/goose/Guangdong/1/96 (H5N1) virus. The NA phylogenetic tree was rooted to the NA gene of Puerto Rico/8/34 (H1N1) virus. The PB2 and NS trees were rooted to the PB2 and NS genes of B/Lee/40 virus.
Pathogenicity and replication of influenza (H5N1) viruses in mice*
| Virus | Log10 EID50/mL | MID50† | MLD50† | Titers in mouse organs‡ | ||||
|---|---|---|---|---|---|---|---|---|
| Lungs | Spleen | Brain | Liver | Kidney | ||||
| A/goose/Krasnoozerskoye/627/2005 | 9.2 | 102.2 | 102.3 | 6.1±0.3 | 1.6±0.5 | 5.2±0.2 | 1.6±0.3 | 2.6±0.2 |
| A/turkey/Suzdalka/12/2005 | 9.3 | 105.3 | 106.3 | 4.1±0.6 | <1 | 2.3±0.5 | <1 | <1 |
| A/chicken/Krasnodar/123/2006 | 8.4 | 102.1 | 102.3 | 4.7±0.3 | <1 | <1 | <1 | <1 |
*EID50, 50% egg infectious dose; MID50, 50% mouse infectious dose; MLD50, 50% mouse lethal dose. †The 50% mouse infective dose (MID50) and mouse lethal dose (MLD50) are expressed as number of EID50. Values are the means of 2 titration experiments. ‡Mean ± SD from 3 mice, expressed as log10 EID50/0.1 mg of organ tissue.
Figure 3Replication of influenza (H5N1) viruses in ferret upper respiratory tract. Male 8-month-old outbred ferrets were inoculated intranasally with 106 50% egg infectious dose (EID50) of virus in 0.5 mL phosphate-buffered saline. Virus titers are the mean ± SD from 3 ferrets, expressed as log10 EID50/mL of nasal wash fluid. *Virus was detected in 2 ferrets. †Virus was detected in 1 ferret.
Molecular differences between influenza (H5N1) isolates with high and low pathogenicity in mammalian models
| Protein* | Position | Virus | |
|---|---|---|---|
| A/turkey/Suzdalka/12/2005 | A/goose/Krasnoozerskoye/627/2005 | ||
| PB2 | 80 | I | T |
| 473 | L | M | |
| 483 | M | V | |
| 627 | E | K | |
| 666 | T | I | |
| PB1 | 654 | S | G |
| 655 | M | I | |
| 744 | L | M | |
| PA | 377 | S | N |
| 604 | R | K | |
| 693 | A | V | |
| HA | 2 | K | E |
| 8 | L | F | |
| 170 | N | D | |
| 289 | N | S | |
| NA | 60 | V | L |
| 266 | G | S | |
| NP | 389 | K | R |
*PB, polymerase basic protein; PA, polymerase acidic protein; HA, hemagglutinin; NA, neuraminidase; NP, nucleoprotein.