| Literature DB >> 17553261 |
Robert S Lanciotti1, Olga L Kosoy, Janeen J Laven, Amanda J Panella, Jason O Velez, Amy J Lambert, Grant L Campbell.
Abstract
Chikungunya virus (CHIKV), a mosquito-borne alphavirus, is endemic in Africa and Asia. In 2005-2006, CHIKV epidemics were reported in islands in the Indian Ocean and in southern India. We present data on laboratory-confirmed CHIKV infections among travelers returning from India to the United States during 2006.Entities:
Mesh:
Year: 2007 PMID: 17553261 PMCID: PMC2738459 DOI: 10.3201/eid1305.070015
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Diagnostic test results for 35 travelers infected with chikungunya virus (CHIKV), 2006*
| Sample | IgM ELISA† | IgG ELISA† | PRNT‡ | Virus isolation (Vero cells) | RT-PCR§ | Viremia, PFU/mL¶ | Days from onset of illness to collection | State of US residence | Return date, 2006 |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.7 | 3.2 | 640 | – | – | NA | 0 | NJ | 10/12 |
| 2 | 1.7 | 1.7 | <10 | – | + | 104.0 | 1 | CA | Before 11/28 |
| 3 | 1.2 | 1.1 | ND | + | + | 104.1 | 1 | IL | 9/29 |
| 4 | 1.8 | NS | ND | + | + | 106.8 | 2 | CA | Before 9/16 |
| 5 | 1.2 | 0.76 | ND | + | + | 105.1 | 2 | MA | 9/10 |
| 6 | 1.8 | 1.6 | <10 | + | + | 106.0 | 3 | PA | Before 8/20 |
| 7 | 1.6 | 1.2 | ND | + | + | 105.3 | 3 | CA | 10/2 |
| 8 | NS | 1.4 | ND | – | + | 103.9 | 4 | WI | 10/9 |
| 9 | 22.0 | 4.3 | 5,120 | – | – | NA | 4 | CA | Before 10/6 |
| 10 | 1.1 | 0.95 | <10 | – | + | 104.5 | 6 | CA | Before 8/13 |
| 11 | 7.4 | 0.96 | 40 | – | – | NA | 7 | CA | Before 9/23 |
| 12 | 15.0 | 0.60 | 320 | – | – | NA | 8 | CT | Before 7/6 |
| 13 | 26.2 | 1.2 | 160 | ND | – | NA | 8 | DC | Before 10/16 |
| 14 | 12.9 | 5.8 | 1,80 | ND | – | NA | 10 | CA | Before 9/22 |
| 15 | 38.8 | 2.3 | 2,560 | ND | ND | NA | 19 | CT | Before 7/6 |
| 16 | 12.7 | 1.5 | 640 | ND | – | NA | 20 | IL | 8/23 |
| 17 | 16.9 | 4.8 | 640 | ND | – | NA | 30 | IL | 6/25 |
| 18 | 8.3 | 3.7 | 640 | ND | ND | NA | 31 | HI | Before 8/2 |
| 19 | 6.6 | 1.5 | 640 | ND | – | NA | 31 | CA | Before 8/13 |
| 20 | 2.6 | 6.8 | 320 | ND | – | NA | 34 | MD | Before 3/20 |
| 21 | 5.0 | NS | 640 | ND | – | NA | 34 | IL | Before 9/22 |
| 22 | 15.1 | 4.1 | 1,280 | ND | – | NA | 38 | CA | Before 10/2 |
| 23 | 4.3 | 5.9 | 2,560 | ND | – | NA | 42 | PA | Before 8/20 |
| 24 | 5.6 | NS | 320 | ND | – | NA | 43 | Unknown | Unknown |
| 25 | 3.1 | 3.7 | 640 | ND | – | NA | 44 | IL | Before 9/12 |
| 26 | 26.6 | 13.4 | 5,120 | ND | ND | NA | 48 | SC | 6/24 |
| 27 | 30.7 | 6.6 | 5,120 | ND | – | NA | 61 | CA | Before 10/26 |
| 28 | 6.1 | 11.4 | 2,560 | ND | – | NA | 62 | CT | Before 10/3 |
| 29 | 9.4 | 16.0 | 640 | ND | – | NA | 63 | CA | 8/23 |
| 30 | 7.5 | 8.4 | 1,280 | ND | – | NA | 71 | MN | 6/8 |
| 31 | 5.3 | 5.8 | 640 | ND | – | NA | 71 | MN | 6/8 |
| 32 | 3.7 | 16.1 | 320 | ND | – | NA | 75 | LA | Before 3/30 |
| 33 | 9.8 | 10.1 | 2,560 | ND | – | NA | 92 | IL | 7/9 |
| 34 | 7.5 | 3.1 | 160 | ND | – | NA | 101 | PA | Before 10/13 |
| 35 | 24.6 | 11.9 | 20,480 | ND | – | NA | Unknown | IL | Before 11/08 |
*IgM, immunoglobulin M; PRNT, plaque reduction neutralization test; RT-PCR, reverse transcription–PCR; NA, not applicable; ND, not done (sampled depleted); NS, nonspecific reaction in ELISA. †Values are patient sample optical densities divided by a negative control optical density; values >3 are positive. ‡Values are 90% plaque reduction neutralization titers. §Real-time, fluorescence-based assay for detecting CHIKV RNA; positive samples had crossing threshold values <37 with both primer sets. ¶Estimated CHIKV PFU/mL by real-time RT-PCR using a standard curve generated with plaque-titrated/calibrated CHIKV standards.
Sensitivity and specificity of chikungunya virus (CHIKV) oligonucleotide primers used in real-time reverse transcription–PCR assay
| Primer | Genome position* | Sequence (5′→3′) | Sensitivity† | Specificity‡ |
|---|---|---|---|---|
| CHIKV 874 | 874–894 | AAAGGGCAAACTCAGCTTCAC |
|
|
| CHIKV 961 | 961–942 | GCCTGGGCTCATCGTTATTC | 0.3 | CHIKV |
| CHIKV 899-FAM§ | 899–923 | CGCTGTGATACAGTGGTTTCGTGTG |
|
|
| CHIKV 6856 | 6856–6879 | TCACTCCCTGTTGGACTTGATAGA |
|
|
| CHIKV 6981 | 6981–6956 | TTGACGAACAGAGTTAGGAACATACC | 0.9 | CHIKV |
| CHIKV 6919-FAM | 6919–6941 | AGGTACGCGCTTCAAGTTCGGCG |
*On the basis of CHIKV prototype strain S27, GenBank accession no. NC_004162. †Absolute no. of PFU detected in triplicate testing. ‡No reactivity was observed with the following viruses: o’nyong nyong, Ross River, Mayaro, Semliki Forest, Sindbis, western equine encephalitis, eastern equine encephalitis, and Venezuelan equine encephalitis subtypes 1AB, 1C, 1D, and 1E. §Primer labeled at the 5′ terminus with 5-FAM and 3′ Black Hole Quencher 1 (Operon Biotechnologies Inc., Huntsville, AL, USA).