Literature DB >> 17547373

Probing electrostatic interactions along the reaction pathway of a glycoside hydrolase: histidine characterization by NMR spectroscopy.

Mario Schubert1, David K Y Poon, Jacqueline Wicki, Chris A Tarling, Emily M Kwan, Jens E Nielsen, Stephen G Withers, Lawrence P McIntosh.   

Abstract

We have characterized by NMR spectroscopy the three active site (His80, His85, and His205) and two non-active site (His107 and His114) histidines in the 34 kDa catalytic domain of Cellulomonas fimi xylanase Cex in its apo, noncovalently aza-sugar-inhibited, and trapped glycosyl-enzyme intermediate states. Due to protection from hydrogen exchange, the level of which increased upon inhibition, the labile 1Hdelta1 and 1H epsilon1 atoms of four histidines (t1/2 approximately 0.1-300 s at 30 degrees C and pH approximately 7), as well as the nitrogen-bonded protons in the xylobio-imidazole and -isofagomine inhibitors, could be observed with chemical shifts between 10.2 and 17.6 ppm. The histidine pKa values and neutral tautomeric forms were determined from their pH-dependent 13C epsilon1-1H epsilon1 chemical shifts, combined with multiple-bond 1H delta2/epsilon1-15N delta1/epsilon2 scalar coupling patterns. Remarkably, these pKa values span more than 8 log units such that at the pH optimum of approximately 6 for Cex activity, His107 and His205 are positively charged (pKa > 10.4), His85 is neutral (pKa < 2.8), and both His80 (pKa = 7.9) and His114 (pKa = 8.1) are titrating between charged and neutral states. Furthermore, upon formation of the glycosyl-enzyme intermediate, the pKa value of His80 drops from 7.9 to <2.8, becoming neutral and accepting a hydrogen bond from an exocyclic oxygen of the bound sugar moiety. Changes in the pH-dependent activity of Cex due to mutation of His80 to an alanine confirm the importance of this interaction. The diverse ionization behaviors of the histidine residues are discussed in terms of their structural and functional roles in this model glycoside hydrolase.

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Year:  2007        PMID: 17547373     DOI: 10.1021/bi700249m

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

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4.  pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements.

Authors:  Gerald Platzer; Mark Okon; Lawrence P McIntosh
Journal:  J Biomol NMR       Date:  2014-09-20       Impact factor: 2.835

5.  A strong 13C chemical shift signature provides the coordination mode of histidines in zinc-binding proteins.

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6.  Reactive cysteine in the structural Zn(2+) site of the C1B domain from PKCα.

Authors:  Mikaela D Stewart; Tatyana I Igumenova
Journal:  Biochemistry       Date:  2012-09-05       Impact factor: 3.162

7.  Analysis of site-specific histidine protonation in human prolactin.

Authors:  M Cristina Tettamanzi; Camille Keeler; Syrus Meshack; Michael E Hodsdon
Journal:  Biochemistry       Date:  2008-07-25       Impact factor: 3.162

8.  Calcium Regulates S100A12 Zinc Sequestration by Limiting Structural Variations.

Authors:  Qian Wang; Aleksey Aleshintsev; Aneesha N Jose; James M Aramini; Rupal Gupta
Journal:  Chembiochem       Date:  2020-01-20       Impact factor: 3.164

9.  Molecular Dynamics and Metadynamics Simulations of the Cellulase Cel48F.

Authors:  Osmair Vital de Oliveira
Journal:  Enzyme Res       Date:  2014-05-21

10.  Kinetic analysis and molecular modeling of the inhibition mechanism of roneparstat (SST0001) on human heparanase.

Authors:  Daniele Pala; Silvia Rivara; Marco Mor; Ferdinando Maria Milazzo; Giuseppe Roscilli; Emiliano Pavoni; Giuseppe Giannini
Journal:  Glycobiology       Date:  2016-01-13       Impact factor: 4.313

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