Literature DB >> 17540678

VISDA: an open-source caBIG analytical tool for data clustering and beyond.

Jiajing Wang1, Huai Li, Yitan Zhu, Malik Yousef, Michael Nebozhyn, Michael Showe, Louise Showe, Jianhua Xuan, Robert Clarke, Yue Wang.   

Abstract

SUMMARY: VISDA (Visual Statistical Data Analyzer) is a caBIG analytical tool for cluster modeling, visualization and discovery that has met silver-level compatibility under the caBIG initiative. Being statistically principled and visually interfaced, VISDA exploits both hierarchical statistics modeling and human gift for pattern recognition to allow a progressive yet interactive discovery of hidden clusters within high dimensional and complex biomedical datasets. The distinctive features of VISDA are particularly useful for users across the cancer research and broader research communities to analyze complex biological data. AVAILABILITY: http://gforge.nci.nih.gov/projects/visda/

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Year:  2007        PMID: 17540678     DOI: 10.1093/bioinformatics/btm290

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  8 in total

Review 1.  A ground truth based comparative study on clustering of gene expression data.

Authors:  Yitan Zhu; Zuyi Wang; David J Miller; Robert Clarke; Jianhua Xuan; Eric P Hoffman; Yue Wang
Journal:  Front Biosci       Date:  2008-05-01

2.  LAS: a software platform to support oncological data management.

Authors:  Elena Baralis; Andrea Bertotti; Alessandro Fiori; Alberto Grand
Journal:  J Med Syst       Date:  2012-11-02       Impact factor: 4.460

3.  SimplevisGrid: grid services for visualization of diverse biomedical knowledge and molecular systems data.

Authors:  Todd H Stokes; May D Wang
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

4.  SaTScan on a Cloud: On-Demand Large Scale Spatial Analysis of Epidemics.

Authors:  Ronald C Price; Warren Pettey; Tim Freeman; Kate Keahey; Molly Leecaster; Matthew Samore; James Tobias; Julio C Facelli
Journal:  Online J Public Health Inform       Date:  2010-04-09

5.  caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data.

Authors:  Yitan Zhu; Huai Li; David J Miller; Zuyi Wang; Jianhua Xuan; Robert Clarke; Eric P Hoffman; Yue Wang
Journal:  BMC Bioinformatics       Date:  2008-09-18       Impact factor: 3.169

6.  Asynchronous remodeling is a driver of failed regeneration in Duchenne muscular dystrophy.

Authors:  Sherry Dadgar; Zuyi Wang; Helen Johnston; Akanchha Kesari; Kanneboyina Nagaraju; Yi-Wen Chen; D Ashley Hill; Terence A Partridge; Mamta Giri; Robert J Freishtat; Javad Nazarian; Jianhua Xuan; Yue Wang; Eric P Hoffman
Journal:  J Cell Biol       Date:  2014-10-13       Impact factor: 10.539

7.  Gene module identification from microarray data using nonnegative independent component analysis.

Authors:  Ting Gong; Jianhua Xuan; Chen Wang; Huai Li; Eric Hoffman; Robert Clarke; Yue Wang
Journal:  Gene Regul Syst Bio       Date:  2008-01-15

Review 8.  Approaches to working in high-dimensional data spaces: gene expression microarrays.

Authors:  Y Wang; D J Miller; R Clarke
Journal:  Br J Cancer       Date:  2008-02-19       Impact factor: 7.640

  8 in total

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