Literature DB >> 17538625

A mass spectrometry-friendly database for cSNP identification.

Søren Schandorff, Jesper V Olsen, Jakob Bunkenborg, Blagoy Blagoev, Yong Zhang, Jens S Andersen, Matthias Mann.   

Abstract

Mesh：

Year:  2007        PMID： 17538625     DOI： 10.1038/nmeth0607-465

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  26 in total

1.  CanProVar: a human cancer proteome variation database.

Authors:  Jing Li; Dexter T Duncan; Bing Zhang
Journal:  Hum Mutat       Date:  2010-03       Impact factor: 4.878

2.  Precision proteomics: the case for high resolution and high mass accuracy.

Authors:  Matthias Mann; Neil L Kelleher
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-25       Impact factor: 11.205

3.  Large-scale mass spectrometric detection of variant peptides resulting from nonsynonymous nucleotide differences.

Authors:  Gloria M Sheynkman; Michael R Shortreed; Brian L Frey; Mark Scalf; Lloyd M Smith
Journal:  J Proteome Res       Date:  2013-11-11       Impact factor: 4.466

4.  Single Amino Acid Variant Profiles of Subpopulations in the MCF-7 Breast Cancer Cell Line.

Authors:  Zhijing Tan; Song Nie; Sean P McDermott; Max S Wicha; David M Lubman
Journal:  J Proteome Res       Date:  2017-01-20       Impact factor: 4.466

5.  Temporal profiling and pulsed SILAC labeling identify novel secreted proteins during ex vivo osteoblast differentiation of human stromal stem cells.

Authors:  Lars P Kristensen; Li Chen; Maria Overbeck Nielsen; Diyako W Qanie; Irina Kratchmarova; Moustapha Kassem; Jens S Andersen
Journal:  Mol Cell Proteomics       Date:  2012-07-16       Impact factor: 5.911

6.  JUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells.

Authors:  Yuxin Li; Xusheng Wang; Ji-Hoon Cho; Timothy I Shaw; Zhiping Wu; Bing Bai; Hong Wang; Suiping Zhou; Thomas G Beach; Gang Wu; Jinghui Zhang; Junmin Peng
Journal:  J Proteome Res       Date:  2016-06-13       Impact factor: 4.466

7.  Protein identification using customized protein sequence databases derived from RNA-Seq data.

Authors:  Xiaojing Wang; Robbert J C Slebos; Dong Wang; Patrick J Halvey; David L Tabb; Daniel C Liebler; Bing Zhang
Journal:  J Proteome Res       Date:  2011-12-14       Impact factor: 4.466

8.  Tiered Human Integrated Sequence Search Databases for Shotgun Proteomics.

Authors:  Eric W Deutsch; Zhi Sun; David S Campbell; Pierre-Alain Binz; Terry Farrah; David Shteynberg; Luis Mendoza; Gilbert S Omenn; Robert L Moritz
Journal:  J Proteome Res       Date:  2016-09-12       Impact factor: 4.466

9.  MSMSpdbb: providing protein databases of closely related organisms to improve proteomic characterization of prokaryotic microbes.

Authors:  Gustavo A de Souza; Magnus Ø Arntzen; Harald G Wiker
Journal:  Bioinformatics       Date:  2010-01-14       Impact factor: 6.937

10.  RAId_DbS: mass-spectrometry based peptide identification web server with knowledge integration.

Authors:  Gelio Alves; Aleksey Y Ogurtsov; Yi-Kuo Yu
Journal:  BMC Genomics       Date:  2008-10-27       Impact factor: 3.969
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