Literature DB >> 17531544

FreeViz--an intelligent multivariate visualization approach to explorative analysis of biomedical data.

Janez Demsar1, Gregor Leban, Blaz Zupan.   

Abstract

Visualization can largely improve biomedical data analysis. It plays a crucial role in explorative data analysis and may support various data mining tasks. The paper presents FreeViz, an optimization method that finds linear projection and associated scatterplot that best separates instances of different class. In a single graph, the resulting FreeViz visualization can provide a global view of the classification problem being studied, reveal interesting relations between classes and features, uncover feature interactions, and provide information about intra-class similarities. The paper gives mathematical foundations of FreeViz, and presents its utility on various biomedical data sets.

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Year:  2007        PMID: 17531544     DOI: 10.1016/j.jbi.2007.03.010

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  8 in total

1.  Similarity-dissimilarity plot for visualization of high dimensional data in biomedical pattern classification.

Authors:  Muhammad Arif
Journal:  J Med Syst       Date:  2010-08-24       Impact factor: 4.460

2.  3D similarity-dissimilarity plot for high dimensional data visualization in the context of biomedical pattern classification.

Authors:  Muhammad Arif; Saleh Basalamah
Journal:  J Med Syst       Date:  2013-04-13       Impact factor: 4.460

3.  Unique metabolite preferences of the drug transporters OAT1 and OAT3 analyzed by machine learning.

Authors:  Anisha K Nigam; Julia G Li; Kaustubh Lall; Da Shi; Kevin T Bush; Vibha Bhatnagar; Ruben Abagyan; Sanjay K Nigam
Journal:  J Biol Chem       Date:  2020-01-02       Impact factor: 5.157

4.  Visualization-aided classification ensembles discriminate lung adenocarcinoma and squamous cell carcinoma samples using their gene expression profiles.

Authors:  Ao Zhang; Chi Wang; Shiji Wang; Liang Li; Zhongmin Liu; Suyan Tian
Journal:  PLoS One       Date:  2014-10-15       Impact factor: 3.240

5.  Multiclass imbalance learning: Improving classification of pediatric brain tumors from magnetic resonance spectroscopy.

Authors:  Niloufar Zarinabad; Martin Wilson; Simrandip K Gill; Karen A Manias; Nigel P Davies; Andrew C Peet
Journal:  Magn Reson Med       Date:  2016-07-12       Impact factor: 4.668

6.  Identification of a Shared Microbiomic and Metabolomic Profile in Systemic Autoimmune Diseases.

Authors:  Chiara Bellocchi; Álvaro Fernández-Ochoa; Gaia Montanelli; Barbara Vigone; Alessandro Santaniello; Rosa Quirantes-Piné; Isabel Borrás-Linares; Maria Gerosa; Carolina Artusi; Roberta Gualtierotti; Antonio Segura-Carrettero; Marta E Alarcón-Riquelme; Lorenzo Beretta
Journal:  J Clin Med       Date:  2019-08-23       Impact factor: 4.241

7.  Molecular Properties of Drugs Handled by Kidney OATs and Liver OATPs Revealed by Chemoinformatics and Machine Learning: Implications for Kidney and Liver Disease.

Authors:  Anisha K Nigam; Anupam A Ojha; Julia G Li; Da Shi; Vibha Bhatnagar; Kabir B Nigam; Ruben Abagyan; Sanjay K Nigam
Journal:  Pharmaceutics       Date:  2021-10-18       Impact factor: 6.321

8.  Computational models of liver fibrosis progression for hepatitis C virus chronic infection.

Authors:  James Lara; F López-Labrador; Fernando González-Candelas; Marina Berenguer; Yury E Khudyakov
Journal:  BMC Bioinformatics       Date:  2014-07-14       Impact factor: 3.169

  8 in total

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