Literature DB >> 17531140

A fast and efficient segmentation scheme for cell microscopic image.

G Lebrun1, C Charrier, O Lezoray, C Meurie, H Cardot.   

Abstract

Microscopic cellular image segmentation schemes must be efficient for reliable analysis and fast to process huge quantity of images. Recent studies have focused on improving segmentation quality. Several segmentation schemes have good quality but processing time is too expensive to deal with a great number of images per day. For segmentation schemes based on pixel classification, the classifier design is crucial since it is the one which requires most of the processing time necessary to segment an image. The main contribution of this work is focused on how to reduce the complexity of decision functions produced by support vector machines (SVM) while preserving recognition rate. Vector quantization is used in order to reduce the inherent redundancy present in huge pixel databases (i.e. images with expert pixel segmentation). Hybrid color space design is also used in order to improve data set size reduction rate and recognition rate. A new decision function quality criterion is defined to select good trade-off between recognition rate and processing time of pixel decision function. The first results of this study show that fast and efficient pixel classification with SVM is possible. Moreover posterior class pixel probability estimation is easy to compute with Platt method. Then a new segmentation scheme using probabilistic pixel classification has been developed. This one has several free parameters and an automatic selection must dealt with, but criteria for evaluate segmentation quality are not well adapted for cell segmentation, especially when comparison with expert pixel segmentation must be achieved. Another important contribution in this paper is the definition of a new quality criterion for evaluation of cell segmentation. The results presented here show that the selection of free parameters of the segmentation scheme by optimisation of the new quality cell segmentation criterion produces efficient cell segmentation.

Mesh:

Year:  2007        PMID: 17531140

Source DB:  PubMed          Journal:  Cell Mol Biol (Noisy-le-grand)        ISSN: 0145-5680            Impact factor:   1.770


  3 in total

1.  Probability machines: consistent probability estimation using nonparametric learning machines.

Authors:  J D Malley; J Kruppa; A Dasgupta; K G Malley; A Ziegler
Journal:  Methods Inf Med       Date:  2011-09-14       Impact factor: 2.176

2.  Enhanced CellClassifier: a multi-class classification tool for microscopy images.

Authors:  Benjamin Misselwitz; Gerhard Strittmatter; Balamurugan Periaswamy; Markus C Schlumberger; Samuel Rout; Peter Horvath; Karol Kozak; Wolf-Dietrich Hardt
Journal:  BMC Bioinformatics       Date:  2010-01-14       Impact factor: 3.169

3.  Image classification of human carcinoma cells using complex wavelet-based covariance descriptors.

Authors:  Furkan Keskin; Alexander Suhre; Kivanc Kose; Tulin Ersahin; A Enis Cetin; Rengul Cetin-Atalay
Journal:  PLoS One       Date:  2013-01-16       Impact factor: 3.240

  3 in total

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