Literature DB >> 1752412

Seven-base-pair inverted repeats in DNA form stable hairpins in vivo in Saccharomyces cerevisiae.

D K Nag1, T D Petes.   

Abstract

Palindromic sequences in single-stranded DNA and RNA have the potential for intrastrand base pairing, resulting in formation of "hairpin" structures. We previously reported a genetic method for detecting such structures in vivo in the yeast Saccharomyces cerevisiae. Below, we describe evidence indicating that a 14-base-pair palindrome (7 bp per inverted repeat) is sufficient for formation of a hairpin in vivo.

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Year:  1991        PMID： 1752412      PMCID： PMC1204734     

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  15 in total

1.  Electron microscopy of DNA crosslinked with trimethylpsoralen: test of the secondary structure of eukaryotic inverted repeat sequences.

Authors:  T R Cech; M L Pardue
Journal:  Proc Natl Acad Sci U S A       Date:  1976-08       Impact factor: 11.205

2.  Limits to the role of palindromy in deletion formation.

Authors:  K Weston-Hafer; D E Berg
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

3.  Predicting DNA duplex stability from the base sequence.

Authors:  K J Breslauer; R Frank; H Blöcker; L A Marky
Journal:  Proc Natl Acad Sci U S A       Date:  1986-06       Impact factor: 11.205

4.  Replacement of chromosome segments with altered DNA sequences constructed in vitro.

Authors:  S Scherer; R W Davis
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

5.  Estimation of secondary structure in ribonucleic acids.

Authors:  I Tinoco; O C Uhlenbeck; M D Levine
Journal:  Nature       Date:  1971-04-09       Impact factor: 49.962

6.  Effects of base sequence on the loop folding in DNA hairpins.

Authors:  M J Blommers; J A Walters; C A Haasnoot; J M Aelen; G A van der Marel; J H van Boom; C W Hilbers
Journal:  Biochemistry       Date:  1989-09-05       Impact factor: 3.162

7.  Instability of palindromic DNA in Escherichia coli.

Authors:  J Collins
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1981

8.  Unique self-complementarity of palindromic sequences provides DNA structural intermediates for mutation.

Authors:  L S Ripley; B W Glickman
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

9.  Slow cruciform transitions in palindromic DNA.

Authors:  M Gellert; M H O'Dea; K Mizuuchi
Journal:  Proc Natl Acad Sci U S A       Date:  1983-09       Impact factor: 11.205

10.  Repair of specific base pair mismatches formed during meiotic recombination in the yeast Saccharomyces cerevisiae.

Authors:  P Detloff; J Sieber; T D Petes
Journal:  Mol Cell Biol       Date:  1991-02       Impact factor: 4.272
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  43 in total

1.  The conversion gradient at HIS4 of Saccharomyces cerevisiae. I. Heteroduplex rejection and restoration of Mendelian segregation.

Authors:  K J Hillers; F W Stahl
Journal:  Genetics       Date:  1999-10       Impact factor: 4.562

2.  Use of a small palindrome genetic marker to investigate mechanisms of double-strand-break repair in mammalian cells.

Authors:  J Li; M D Baker
Journal:  Genetics       Date:  2000-03       Impact factor: 4.562

3.  DNA bending and unbending by MutS govern mismatch recognition and specificity.

Authors:  Hong Wang; Yong Yang; Mark J Schofield; Chunwei Du; Yonatan Fridman; Susan D Lee; Erik D Larson; James T Drummond; Eric Alani; Peggy Hsieh; Dorothy A Erie
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-21       Impact factor: 11.205

4.  Analysis of a gene conversion gradient at the HIS4 locus in Saccharomyces cerevisiae.

Authors:  P Detloff; M A White; T D Petes
Journal:  Genetics       Date:  1992-09       Impact factor: 4.562

Review 5.  The role of fork stalling and DNA structures in causing chromosome fragility.

Authors:  Simran Kaushal; Catherine H Freudenreich
Journal:  Genes Chromosomes Cancer       Date:  2019-01-29       Impact factor: 5.006

6.  Triplet repeats form secondary structures that escape DNA repair in yeast.

Authors:  H Moore; P W Greenwell; C P Liu; N Arnheim; T D Petes
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-16       Impact factor: 11.205

7.  Efficient repair of large DNA loops in Saccharomyces cerevisiae.

Authors:  S E Corrette-Bennett; N L Mohlman; Z Rosado; J J Miret; P M Hess; B O Parker; R S Lahue
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

8.  The Saccharomyces cerevisiae Msh2 and Msh6 proteins form a complex that specifically binds to duplex oligonucleotides containing mismatched DNA base pairs.

Authors:  E Alani
Journal:  Mol Cell Biol       Date:  1996-10       Impact factor: 4.272

9.  Measurements of excision repair tracts formed during meiotic recombination in Saccharomyces cerevisiae.

Authors:  P Detloff; T D Petes
Journal:  Mol Cell Biol       Date:  1992-04       Impact factor: 4.272

10.  Reduced mismatch repair of heteroduplexes reveals "non"-interfering crossing over in wild-type Saccharomyces cerevisiae.

Authors:  Tony J Getz; Stephen A Banse; Lisa S Young; Allison V Banse; Johanna Swanson; Grace M Wang; Barclay L Browne; Henriette M Foss; Franklin W Stahl
Journal:  Genetics       Date:  2008-03       Impact factor: 4.562
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