Literature DB >> 17518769

MEGU: pathway mapping web-service based on KEGG and SVG.

Nobuaki Kono1, Kazuharu Arakawa, Masaru Tomita.   

Abstract

Scientific visualization is a key technology to enhance our understanding of huge masses of omics data, especially for cell-wide, high-throughput measurements of the physiological networks. We have developed a web application that visualizes complex omics data of multiple layers simultaneously, including transcriptome, proteome, and metabolome, onto an integrated pathway diagram derived by connecting the individual KEGG pathway maps; the mapped images are generated in Scalable Vector Graphics for easy editing by hand or with computer programs or drawing software. The web application is available at http://megu.iab.keio.ac.jp/.

Mesh:

Year:  2006        PMID: 17518769

Source DB:  PubMed          Journal:  In Silico Biol        ISSN: 1386-6338


  7 in total

1.  Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.

Authors:  Peter D Karp; Suzanne M Paley; Markus Krummenacker; Mario Latendresse; Joseph M Dale; Thomas J Lee; Pallavi Kaipa; Fred Gilham; Aaron Spaulding; Liviu Popescu; Tomer Altman; Ian Paulsen; Ingrid M Keseler; Ron Caspi
Journal:  Brief Bioinform       Date:  2009-12-02       Impact factor: 11.622

2.  FAME, the Flux Analysis and Modeling Environment.

Authors:  Joost Boele; Brett G Olivier; Bas Teusink
Journal:  BMC Syst Biol       Date:  2012-01-30

3.  KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data.

Authors:  Nozomu Sakurai; Takeshi Ara; Yoshiyuki Ogata; Ryosuke Sano; Takashi Ohno; Kenjiro Sugiyama; Atsushi Hiruta; Kiyoshi Yamazaki; Kentaro Yano; Koh Aoki; Asaph Aharoni; Kazuki Hamada; Koji Yokoyama; Shingo Kawamura; Hirofumi Otsuka; Toshiaki Tokimatsu; Minoru Kanehisa; Hideyuki Suzuki; Kazuki Saito; Daisuke Shibata
Journal:  Nucleic Acids Res       Date:  2010-11-19       Impact factor: 16.971

4.  KEGG Atlas mapping for global analysis of metabolic pathways.

Authors:  Shujiro Okuda; Takuji Yamada; Masami Hamajima; Masumi Itoh; Toshiaki Katayama; Peer Bork; Susumu Goto; Minoru Kanehisa
Journal:  Nucleic Acids Res       Date:  2008-05-13       Impact factor: 16.971

Review 5.  Tools for visualization and analysis of molecular networks, pathways, and -omics data.

Authors:  Jose M Villaveces; Prasanna Koti; Bianca H Habermann
Journal:  Adv Appl Bioinform Chem       Date:  2015-06-04

6.  Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.

Authors:  Nobuaki Kono; Kazuharu Arakawa; Ryu Ogawa; Nobuhiro Kido; Kazuki Oshita; Keita Ikegami; Satoshi Tamaki; Masaru Tomita
Journal:  PLoS One       Date:  2009-11-11       Impact factor: 3.240

7.  Genome Projector: zoomable genome map with multiple views.

Authors:  Kazuharu Arakawa; Satoshi Tamaki; Nobuaki Kono; Nobuhiro Kido; Keita Ikegami; Ryu Ogawa; Masaru Tomita
Journal:  BMC Bioinformatics       Date:  2009-01-23       Impact factor: 3.169

  7 in total

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