Literature DB >> 17513582

Alpha-agarases define a new family of glycoside hydrolases, distinct from beta-agarase families.

Didier Flament1, Tristan Barbeyron, Murielle Jam, Philippe Potin, Mirjam Czjzek, Bernard Kloareg, Gurvan Michel.   

Abstract

The gene encoding the alpha-agarase from "Alteromonas agarilytica" (proposed name) has been cloned and sequenced. The gene product (154 kDa) is unrelated to beta-agarases and instead belongs to a new family of glycoside hydrolases (GH96). The alpha-agarase also displays a complex modularity, with the presence of five thrombospondin type 3 repeats and three carbohydrate-binding modules.

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Year:  2007        PMID： 17513582      PMCID： PMC1932826          DOI： 10.1128/AEM.00496-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  14 in total

1.  ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins.

Authors:  Patrice Gouet; Xavier Robert; Emmanuel Courcelle
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Improved prediction of signal peptides: SignalP 3.0.

Authors:  Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne; Søren Brunak
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

3.  Structure of a full length psychrophilic cellulase from Pseudoalteromonas haloplanktis revealed by X-ray diffraction and small angle X-ray scattering.

Authors:  Sébastien Violot; Nushin Aghajari; Mirjam Czjzek; Georges Feller; Guillaume K Sonan; Patrice Gouet; Charles Gerday; Richard Haser; Véronique Receveur-Bréchot
Journal:  J Mol Biol       Date:  2005-03-25       Impact factor: 5.469

4.  The kappa-carrageenase of the marine bacterium Cytophaga drobachiensis. Structural and phylogenetic relationships within family-16 glycoside hydrolases.

Authors:  T Barbeyron; A Gerard; P Potin; B Henrissat; B Kloareg
Journal:  Mol Biol Evol       Date:  1998-05       Impact factor: 16.240

5.  Cloning and biochemical characterization of the fucanase FcnA: definition of a novel glycoside hydrolase family specific for sulfated fucans.

Authors:  Sébastien Colin; Estelle Deniaud; Murielle Jam; Valérie Descamps; Yann Chevolot; Nelly Kervarec; Jean-Claude Yvin; Tristan Barbeyron; Gurvan Michel; Bernard Kloareg
Journal:  Glycobiology       Date:  2006-07-31       Impact factor: 4.313

6.  The three-dimensional structures of two beta-agarases.

Authors:  Julie Allouch; Murielle Jam; William Helbert; Tristan Barbeyron; Bernard Kloareg; Bernard Henrissat; Mirjam Czjzek
Journal:  J Biol Chem       Date:  2003-09-11       Impact factor: 5.157

7.  The endo-beta-agarases AgaA and AgaB from the marine bacterium Zobellia galactanivorans: two paralogue enzymes with different molecular organizations and catalytic behaviours.

Authors:  Murielle Jam; Didier Flament; Julie Allouch; Philippe Potin; Laurent Thion; Bernard Kloareg; Mirjam Czjzek; William Helbert; Gurvan Michel; Tristan Barbeyron
Journal:  Biochem J       Date:  2005-02-01       Impact factor: 3.857

8.  Structure of a thrombospondin C-terminal fragment reveals a novel calcium core in the type 3 repeats.

Authors:  Marc Kvansakul; Josephine C Adams; Erhard Hohenester
Journal:  EMBO J       Date:  2004-03-11       Impact factor: 11.598

9.  Parallel substrate binding sites in a beta-agarase suggest a novel mode of action on double-helical agarose.

Authors:  Julie Allouch; William Helbert; Bernard Henrissat; Mirjam Czjzek
Journal:  Structure       Date:  2004-04       Impact factor: 5.006

10.  Purification and characterization of the alpha-agarase from Alteromonas agarlyticus (Cataldi) comb. nov., strain GJ1B.

Authors:  P Potin; C Richard; C Rochas; B Kloareg
Journal:  Eur J Biochem       Date:  1993-06-01
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  13 in total

1.  Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans.

Authors:  Jan-Hendrik Hehemann; Gaëlle Correc; François Thomas; Thomas Bernard; Tristan Barbeyron; Murielle Jam; William Helbert; Gurvan Michel; Mirjam Czjzek
Journal:  J Biol Chem       Date:  2012-07-09       Impact factor: 5.157

Review 2.  Microbial Surface Colonization and Biofilm Development in Marine Environments.

Authors:  Hongyue Dang; Charles R Lovell
Journal:  Microbiol Mol Biol Rev       Date:  2015-12-23       Impact factor: 11.056

3.  Analysis of keystone enzyme in Agar hydrolysis provides insight into the degradation (of a polysaccharide from) red seaweeds.

Authors:  Jan-Hendrik Hehemann; Leo Smyth; Anuj Yadav; David J Vocadlo; Alisdair B Boraston
Journal:  J Biol Chem       Date:  2012-03-05       Impact factor: 5.157

4.  Enzymatic characterization of a novel recombinant 1,3-α-3,6-anhydro-L-galactosidase specific for neoagarobiose hydrolysis into monosaccharides.

Authors:  Won Young Jang; Mi Jung Kwon; Ki Yun Kim; Young Ho Kim
Journal:  Appl Microbiol Biotechnol       Date:  2021-05-31       Impact factor: 4.813

5.  Novel dextranase catalyzing cycloisomaltooligosaccharide formation and identification of catalytic amino acids and their functions using chemical rescue approach.

Authors:  Young-Min Kim; Yoshiaki Kiso; Tomoe Muraki; Min-Sun Kang; Hiroyuki Nakai; Wataru Saburi; Weeranuch Lang; Hee-Kwon Kang; Masayuki Okuyama; Haruhide Mori; Ryuichiro Suzuki; Kazumi Funane; Nobuhiro Suzuki; Mitsuru Momma; Zui Fujimoto; Tetsuya Oguma; Mikihiko Kobayashi; Doman Kim; Atsuo Kimura
Journal:  J Biol Chem       Date:  2012-03-29       Impact factor: 5.157

6.  A Novel Auxiliary Agarolytic Pathway Expands Metabolic Versatility in the Agar-Degrading Marine Bacterium Colwellia echini A3T.

Authors:  Duleepa Pathiraja; Line Christiansen; Byeonghyeok Park; Mikkel Schultz-Johansen; Geul Bang; Peter Stougaard; In-Geol Choi
Journal:  Appl Environ Microbiol       Date:  2021-05-26       Impact factor: 4.792

Review 7.  Marine microbial genomics in Europe: current status and perspectives.

Authors:  Frank Oliver Glöckner; Ian Joint
Journal:  Microb Biotechnol       Date:  2010-09       Impact factor: 5.813

8.  An extra peptide within the catalytic module of a β-agarase affects the agarose degradation pattern.

Authors:  Wen-Jun Han; Jing-Yan Gu; Hui-Hui Liu; Fu-Chuan Li; Zhi-Hong Wu; Yue-Zhong Li
Journal:  J Biol Chem       Date:  2013-02-01       Impact factor: 5.157

9.  Biochemical Characteristics and Substrate Degradation Pattern of a Novel Exo-Type β-Agarase from the Polysaccharide-Degrading Marine Bacterium Flammeovirga sp. Strain MY04.

Authors:  Wenjun Han; Yuanyuan Cheng; Dandan Wang; Shumin Wang; Huihui Liu; Jingyan Gu; Zhihong Wu; Fuchuan Li
Journal:  Appl Environ Microbiol       Date:  2016-07-29       Impact factor: 4.792

10.  Surface translocation by Legionella pneumophila: a form of sliding motility that is dependent upon type II protein secretion.

Authors:  Catherine R Stewart; Ombeline Rossier; Nicholas P Cianciotto
Journal:  J Bacteriol       Date:  2008-12-29       Impact factor: 3.490
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