Literature DB >> 17501391

Basin entropy in Boolean network ensembles.

Peter Krawitz1, Ilya Shmulevich.   

Abstract

The information processing capacity of a complex dynamical system is reflected in the partitioning of its state space into disjoint basins of attraction, with state trajectories in each basin flowing towards their corresponding attractor. We introduce a novel network parameter, the basin entropy, as a measure of the complexity of information that such a system is capable of storing. By studying ensembles of random Boolean networks, we find that the basin entropy scales with system size only in critical regimes, suggesting that the informationally optimal partition of the state space is achieved when the system is operating at the critical boundary between the ordered and disordered phases.

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Year:  2007        PMID: 17501391     DOI: 10.1103/PhysRevLett.98.158701

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  17 in total

1.  Inference of Boolean networks using sensitivity regularization.

Authors:  Wenbin Liu; Harri Lähdesmäki; Edward R Dougherty; Ilya Shmulevich
Journal:  EURASIP J Bioinform Syst Biol       Date:  2008

2.  Logical Reduction of Biological Networks to Their Most Determinative Components.

Authors:  Mihaela T Matache; Valentin Matache
Journal:  Bull Math Biol       Date:  2016-07-14       Impact factor: 1.758

3.  Information propagation within the Genetic Network of Saccharomyces cerevisiae.

Authors:  Sharif Chowdhury; Jason Lloyd-Price; Olli-Pekka Smolander; Wayne C V Baici; Timothy R Hughes; Olli Yli-Harja; Gordon Chua; Andre S Ribeiro
Journal:  BMC Syst Biol       Date:  2010-10-26

4.  Digital clocks: simple Boolean models can quantitatively describe circadian systems.

Authors:  Ozgur E Akman; Steven Watterson; Andrew Parton; Nigel Binns; Andrew J Millar; Peter Ghazal
Journal:  J R Soc Interface       Date:  2012-04-12       Impact factor: 4.118

5.  Balance between noise and information flow maximizes set complexity of network dynamics.

Authors:  Tuomo Mäki-Marttunen; Juha Kesseli; Matti Nykter
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

6.  Robustness and backbone motif of a cancer network regulated by miR-17-92 cluster during the G1/S transition.

Authors:  Lijian Yang; Yan Meng; Chun Bao; Wangheng Liu; Chengzhang Ma; Anbang Li; Zhan Xuan; Ge Shan; Ya Jia
Journal:  PLoS One       Date:  2013-03-01       Impact factor: 3.240

7.  Dynamics of random Boolean networks under fully asynchronous stochastic update based on linear representation.

Authors:  Chao Luo; Xingyuan Wang
Journal:  PLoS One       Date:  2013-06-13       Impact factor: 3.240

8.  Robustness and information propagation in attractors of Random Boolean Networks.

Authors:  Jason Lloyd-Price; Abhishekh Gupta; Andre S Ribeiro
Journal:  PLoS One       Date:  2012-07-30       Impact factor: 3.240

9.  Multistable switches and their role in cellular differentiation networks.

Authors:  Ahmadreza Ghaffarizadeh; Nicholas S Flann; Gregory J Podgorski
Journal:  BMC Bioinformatics       Date:  2014-05-28       Impact factor: 3.169

10.  Form and function in gene regulatory networks: the structure of network motifs determines fundamental properties of their dynamical state space.

Authors:  S E Ahnert; T M A Fink
Journal:  J R Soc Interface       Date:  2016-07       Impact factor: 4.118

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