Literature DB >> 17500517

Chromophore channeling in the G-protein coupled receptor rhodopsin.

Ting Wang1, Yong Duan.   

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Year:  2007        PMID： 17500517      PMCID： PMC2819262          DOI： 10.1021/ja0691977

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


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2.  Crystal structure of rhodopsin: A G protein-coupled receptor.

Authors:  K Palczewski; T Kumasaka; T Hori; C A Behnke; H Motoshima; B A Fox; I Le Trong; D C Teller; T Okada; R E Stenkamp; M Yamamoto; M Miyano
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3.  Ligand channeling within a G-protein-coupled receptor. The entry and exit of retinals in native opsin.

Authors:  Sandra A Schädel; Martin Heck; Dieter Maretzki; Slawomir Filipek; David C Teller; Krzysztof Palczewski; Klaus Peter Hofmann
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4.  Ligand-supported homology modeling of g-protein-coupled receptor sites: models sufficient for successful virtual screening.

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5.  A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.

Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

6.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
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7.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

8.  Do mammalian cytochrome P450s show multiple ligand access pathways and ligand channelling?

Authors:  Karin Schleinkofer; Peter J Winn; Susanne K Lüdemann; Rebecca C Wade
Journal:  EMBO Rep       Date:  2005-06       Impact factor: 8.807

9.  Retinal counterion switch mechanism in vision evaluated by molecular simulations.

Authors:  Karina Martínez-Mayorga; Michael C Pitman; Alan Grossfield; Scott E Feller; Michael F Brown
Journal:  J Am Chem Soc       Date:  2006-12-27       Impact factor: 15.419

10.  Cysteine residues 110 and 187 are essential for the formation of correct structure in bovine rhodopsin.

Authors:  S S Karnik; T P Sakmar; H B Chen; H G Khorana
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205
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  29 in total

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2.  Hydrogen/Deuterium Exchange Mass Spectrometry of Human Green Opsin Reveals a Conserved Pro-Pro Motif in Extracellular Loop 2 of Monostable Visual G Protein-Coupled Receptors.

Authors:  Lukas Hofmann; Nathan S Alexander; Wenyu Sun; Jianye Zhang; Tivadar Orban; Krzysztof Palczewski
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3.  Binding modes of CCR5-targetting HIV entry inhibitors: partial and full antagonists.

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4.  A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB.

Authors:  Lada Biedermannová; Zbyněk Prokop; Artur Gora; Eva Chovancová; Mihály Kovács; Jiří Damborsky; Rebecca C Wade
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5.  The Energetics of Chromophore Binding in the Visual Photoreceptor Rhodopsin.

Authors:  He Tian; Thomas P Sakmar; Thomas Huber
Journal:  Biophys J       Date:  2017-07-11       Impact factor: 4.033

6.  Molecular basis of P450 OleTJE: an investigation of substrate binding mechanism and major pathways.

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Journal:  J Comput Aided Mol Des       Date:  2017-03-25       Impact factor: 3.686

7.  Complex binding pathways determine the regeneration of mammalian green cone opsin with a locked retinal analogue.

Authors:  Nathan S Alexander; Kota Katayama; Wenyu Sun; David Salom; Sahil Gulati; Jianye Zhang; Muneto Mogi; Krzysztof Palczewski; Beata Jastrzebska
Journal:  J Biol Chem       Date:  2017-05-09       Impact factor: 5.157

8.  A Hidden Active Site in the Potential Drug Target Mycobacterium tuberculosis dUTPase Is Accessible through Small Amplitude Protein Conformational Changes.

Authors:  Anna Lopata; Ibolya Leveles; Ábris Ádám Bendes; Béla Viskolcz; Beáta G Vértessy; Balázs Jójárt; Judit Tóth
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9.  Ligand entry and exit pathways in the beta2-adrenergic receptor.

Authors:  Ting Wang; Yong Duan
Journal:  J Mol Biol       Date:  2009-08-06       Impact factor: 5.469

10.  Targeting of Drosophila rhodopsin requires helix 8 but not the distal C-terminus.

Authors:  Ines Kock; Natalia A Bulgakova; Elisabeth Knust; Irmgard Sinning; Valérie Panneels
Journal:  PLoS One       Date:  2009-07-02       Impact factor: 3.240
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