Literature DB >> 17497743

Coupling kinetic expressions and metabolic networks for predicting wine fermentations.

Francisco Pizarro1, Cristian Varela, Cecilia Martabit, Claudio Bruno, J Ricardo Pérez-Correa, Eduardo Agosin.   

Abstract

Problematic fermentations are commonplace and cause wine industry producers substantial economic losses through wasted tank capacity and low value final products. Being able to predict such fermentations would enable enologists to take preventive actions. In this study we modeled sugar uptake kinetics and coupled them to a previously developed stoichiometric model, which describes the anaerobic metabolism of Saccharomyces cerevisiae. The resulting model was used to predict normal and slow fermentations under winemaking conditions. The effects of fermentation temperature and initial nitrogen concentration were modeled through an efficiency factor incorporated into the sugar uptake expressions. The model required few initial parameters to successfully reproduce glucose, fructose, and ethanol profiles of laboratory and industrial fermentations. Glycerol and biomass profiles were successfully predicted in nitrogen rich cultures. The time normal or slow wine fermentations needed to complete the process was predicted accurately, at different temperatures. Simulations with a model representing a genetically modified yeast fermentation, reproduced qualitatively well literature results regarding the formation of minor compounds involved in wine complexity and aroma. Therefore, the model also proves useful to explore the effects of genetic modifications on fermentation profiles.

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Year:  2007        PMID: 17497743     DOI: 10.1002/bit.21494

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  9 in total

1.  Metabolic Modeling of Wine Fermentation at Genome Scale.

Authors:  Sebastián N Mendoza; Pedro A Saa; Bas Teusink; Eduardo Agosin
Journal:  Methods Mol Biol       Date:  2022

2.  Oxygen response of the wine yeast Saccharomyces cerevisiae EC1118 grown under carbon-sufficient, nitrogen-limited enological conditions.

Authors:  Felipe F Aceituno; Marcelo Orellana; Jorge Torres; Sebastián Mendoza; Alex W Slater; Francisco Melo; Eduardo Agosin
Journal:  Appl Environ Microbiol       Date:  2012-09-21       Impact factor: 4.792

3.  Expanding a dynamic flux balance model of yeast fermentation to genome-scale.

Authors:  Felipe A Vargas; Francisco Pizarro; J Ricardo Pérez-Correa; Eduardo Agosin
Journal:  BMC Syst Biol       Date:  2011-05-19

4.  Use of chemostat cultures mimicking different phases of wine fermentations as a tool for quantitative physiological analysis.

Authors:  Felícitas Vázquez-Lima; Paulina Silva; Antonio Barreiro; Rubén Martínez-Moreno; Pilar Morales; Manuel Quirós; Ramón González; Joan Albiol; Pau Ferrer
Journal:  Microb Cell Fact       Date:  2014-06-13       Impact factor: 5.328

5.  Clostridium butyricum population balance model: Predicting dynamic metabolic flux distributions using an objective function related to extracellular glycerol content.

Authors:  Luis Miguel Serrano-Bermúdez; Andrés Fernando González Barrios; Dolly Montoya
Journal:  PLoS One       Date:  2018-12-20       Impact factor: 3.240

6.  The Monod Model Is Insufficient To Explain Biomass Growth in Nitrogen-Limited Yeast Fermentation.

Authors:  David Henriques; Eva Balsa-Canto
Journal:  Appl Environ Microbiol       Date:  2021-08-04       Impact factor: 4.792

7.  Thermotolerant genes essential for survival at a critical high temperature in thermotolerant ethanologenic Zymomonas mobilis TISTR 548.

Authors:  Kannikar Charoensuk; Tomoko Sakurada; Amina Tokiyama; Masayuki Murata; Tomoyuki Kosaka; Pornthap Thanonkeo; Mamoru Yamada
Journal:  Biotechnol Biofuels       Date:  2017-08-24       Impact factor: 6.040

8.  Improvement of Thermotolerance of Zymomonas mobilis by Genes for Reactive Oxygen Species-Scavenging Enzymes and Heat Shock Proteins.

Authors:  Sakunda Anggarini; Masayuki Murata; Keisuke Kido; Tomoyuki Kosaka; Kaewta Sootsuwan; Pornthap Thanonkeo; Mamoru Yamada
Journal:  Front Microbiol       Date:  2020-01-30       Impact factor: 5.640

9.  A Multiphase Multiobjective Dynamic Genome-Scale Model Shows Different Redox Balancing among Yeast Species of the Saccharomyces Genus in Fermentation.

Authors:  David Henriques; Romain Minebois; Sebastián N Mendoza; Laura G Macías; Roberto Pérez-Torrado; Eladio Barrio; Bas Teusink; Amparo Querol; Eva Balsa-Canto
Journal:  mSystems       Date:  2021-08-03       Impact factor: 6.496

  9 in total

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