Literature DB >> 17494658

mRNA expression in rabbit experimental aneurysms: a study using gene chip microarrays.

W I Mangrum1, F Farassati, R Kadirvel, C P Kolbert, S Raghavakaimal, D Dai, Y H Ding, D Grill, V G Khurana, D F Kallmes.   

Abstract

BACKGROUND AND
PURPOSE: The molecular characteristics of intracranial aneurysms are still poorly documented. A rabbit elastase aneurysm model has been helpful in the evaluation of devices and strategies involved in endovascular treatment of aneurysms. The goal of this project was to document the molecular changes, assessed by gene chip microarrays, associated with the creation of aneurysms in this model compared with the contralateral carotid artery.
MATERIALS AND METHODS: A microarray of rabbit genes of interest was constructed using rabbit nucleotide sequences from GenBank. Elastase-induced saccular aneurysms were created at the origin of the right common carotid artery in 4 rabbits. Twelve weeks after aneurysm creation, RNA was isolated from the aneurysm as well as the contralateral common carotid artery and used for microarray experiments. Reverse transcription-polymerase chain reaction (RT-PCR) was performed on 1 animal as a confirmatory test.
RESULTS: Ninety-six (46%) of 209 genes in the microarray were differentially expressed in the rabbit aneurysm compared with the contralateral common carotid artery. In general, differential gene expression followed specific molecular pathways. Similarities were found between rabbit aneurysms and human intracranial aneurysms, including increased metalloproteinase activity and decreased production of the extracellular matrix. RT-PCR results confirmed the differential expression found by the gene chip microarray.
CONCLUSIONS: The molecular characteristics of the rabbit elastase-induced saccular aneurysm are described. The rabbit aneurysm model shares some molecular features with human intracranial aneurysms. Future studies can use the rabbit model and the new rabbit gene chip microarray to study the molecular aspects of saccular aneurysms.

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Year:  2007        PMID: 17494658      PMCID: PMC8134323     

Source DB:  PubMed          Journal:  AJNR Am J Neuroradiol        ISSN: 0195-6108            Impact factor:   3.825


  46 in total

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2.  Experimental cerebral aneurysms in the female heterozygous Blotchy mouse.

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3.  Normalization of two-channel microarray experiments: a semiparametric approach.

Authors:  J E Eckel; C Gennings; T M Therneau; L D Burgoon; D R Boverhof; T R Zacharewski
Journal:  Bioinformatics       Date:  2004-10-28       Impact factor: 6.937

4.  [In situ localization of mRNA gelatinases in cerebral aneurysms].

Authors:  J Zhao; L Han; S Wang
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5.  Apoptosis of medial smooth muscle cells in the development of saccular cerebral aneurysms in rats.

Authors:  S Kondo; N Hashimoto; H Kikuchi; F Hazama; I Nagata; H Kataoka
Journal:  Stroke       Date:  1998-01       Impact factor: 7.914

6.  Molecular anatomy of an intracranial aneurysm: coordinated expression of genes involved in wound healing and tissue remodeling.

Authors:  D G Peters; A B Kassam; E Feingold; E Heidrich-O'Hare; H Yonas; R E Ferrell; A Brufsky
Journal:  Stroke       Date:  2001-04       Impact factor: 7.914

7.  The significance of the extracellular matrix in intracranial aneurysms.

Authors:  G Austin; S Fisher; D Dickson; D Anderson; S Richardson
Journal:  Ann Clin Lab Sci       Date:  1993 Mar-Apr       Impact factor: 1.256

8.  Histologic and morphologic comparison of experimental aneurysms with human intracranial aneurysms.

Authors:  T Abruzzo; G G Shengelaia; R C Dawson; D S Owens; C M Cawley; M B Gravanis
Journal:  AJNR Am J Neuroradiol       Date:  1998-08       Impact factor: 3.825

9.  Expression of peroxisome proliferator-activated receptor-gamma in vascular smooth muscle cells is upregulated in cystic medial degeneration of annuloaortic ectasia in Marfan syndrome.

Authors:  Yasunari Sakomura; Hirotaka Nagashima; Yoshikazu Aoka; Kenta Uto; Akiko Sakuta; Shigeyuki Aomi; Hiromi Kurosawa; Toshio Nishikawa; Hiroshi Kasanuki
Journal:  Circulation       Date:  2002-09-24       Impact factor: 29.690

10.  Altered patterns of gene expression distinguishing ascending aortic aneurysms from abdominal aortic aneurysms: complementary DNA expression profiling in the molecular characterization of aortic disease.

Authors:  Tarek S Absi; Thoralf M Sundt; William S Tung; Marc Moon; Jason K Lee; Ralph R Damiano; Robert W Thompson
Journal:  J Thorac Cardiovasc Surg       Date:  2003-08       Impact factor: 5.209

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  12 in total

1.  Differential expression of genes in elastase-induced saccular aneurysms with high and low aspect ratios.

Authors:  Ramanathan Kadirvel; Yong-Hong Ding; Daying Dai; Debra A Lewis; David F Kallmes
Journal:  Neurosurgery       Date:  2010-03       Impact factor: 4.654

2.  Gene expression changes: five years after creation of elastase-induced aneurysms.

Authors:  Ramanathan Kadirvel; Yong-Hong Ding; Daying Dai; Debra A Lewis; David F Kallmes
Journal:  J Vasc Interv Radiol       Date:  2011-04-08       Impact factor: 3.464

3.  Sensitivity of CFD based hemodynamic results in rabbit aneurysm models to idealizations in surrounding vasculature.

Authors:  Zijing Zeng; David F Kallmes; Michael J Durka; Yonghong Ding; Debra Lewis; Ramanathan Kadirvel; Anne M Robertson
Journal:  J Biomech Eng       Date:  2010-09       Impact factor: 2.097

4.  Differential Gene Expression in Coiled versus Flow-Diverter-Treated Aneurysms: RNA Sequencing Analysis in a Rabbit Aneurysm Model.

Authors:  A Rouchaud; C Johnson; E Thielen; D Schroeder; Y-H Ding; D Dai; W Brinjikji; J Cebral; D F Kallmes; R Kadirvel
Journal:  AJNR Am J Neuroradiol       Date:  2015-12-31       Impact factor: 3.825

5.  Gene expression comparison of flow diversion and coiling in an experimental aneurysm model.

Authors:  Cole Puffer; Daying Dai; Yong-Hong Ding; Juan Cebral; David Kallmes; Ramanathan Kadirvel
Journal:  J Neurointerv Surg       Date:  2014-10-20       Impact factor: 5.836

6.  Differential gene expression in well-healed and poorly healed experimental aneurysms after coil treatment.

Authors:  Ramanathan Kadirvel; Yong-Hong Ding; Daying Dai; Debra A Lewis; David F Kallmes
Journal:  Radiology       Date:  2010-09-09       Impact factor: 11.105

7.  RNA-Sequencing Analysis of Messenger RNA/MicroRNA in a Rabbit Aneurysm Model Identifies Pathways and Genes of Interest.

Authors:  M Holcomb; Y-H Ding; D Dai; R J McDonald; J S McDonald; D F Kallmes; R Kadirvel
Journal:  AJNR Am J Neuroradiol       Date:  2015-07-30       Impact factor: 3.825

8.  Healing of saccular aneurysms following platinum coil embolization: lack of improved efficacy with vitamin C supplementation.

Authors:  Daying Dai; Ding Yong-Hong; Issa Rezek; Debra A Lewis; David F Kallmes; Ramanathan Kadirvel
Journal:  J Neurointerv Surg       Date:  2012-08-22       Impact factor: 5.836

9.  Gene expression profiling of experimental saccular aneurysms using deoxyribonucleic acid microarrays.

Authors:  R Kadirvel; Y-H Ding; D Dai; D A Lewis; S Raghavakaimal; H J Cloft; D F Kallmes
Journal:  AJNR Am J Neuroradiol       Date:  2008-07-03       Impact factor: 3.825

10.  Rabbit aneurysm models mimic histologic wall types identified in human intracranial aneurysms.

Authors:  Shunli Wang; Daying Dai; Praveen Kolumam Parameswaran; Ramanathan Kadirvel; Yong-Hong Ding; Anne M Robertson; David F Kallmes
Journal:  J Neurointerv Surg       Date:  2017-08-02       Impact factor: 5.836

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