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Literature DB >> 17483123

A practical guide to the art of RNA gene prediction.

Abstract

This review introduces the different strategies and computational methods that can be used in order to predict RNA genes. It discusses our current view of RNA genes as well as recent computational analyses of RNA genes and concludes with an outlook to future directions in algorithm development and data analyses.

Mesh：

Substances：
RNA, Untranslated

Year: 2007 PMID： 17483123 DOI： 10.1093/bib/bbm011

Source DB: PubMed Journal: Brief Bioinform ISSN： 1467-5463 Impact factor: 11.622

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Cited

13 in total

1. A Dynamic Programming Algorithm for Finding the Optimal Segmentation of an RNA Sequence in Secondary Structure Predictions.

Authors: Abel Licon; Michela Taufer; Ming-Ying Leung; Kyle L Johnson
Journal: 2nd Int Conf Bioinform Comput Biol (2010) Date: 2010-03

2. De novo search for non-coding RNA genes in the AT-rich genome of Dictyostelium discoideum: performance of Markov-dependent genome feature scoring.

Authors: Pontus Larsson; Andrea Hinas; David H Ardell; Leif A Kirsebom; Anders Virtanen; Fredrik Söderbom
Journal: Genome Res Date: 2008-03-17 Impact factor: 9.043

A practical guide to the art of RNA gene prediction.

1. A Dynamic Programming Algorithm for Finding the Optimal Segmentation of an RNA Sequence in Secondary Structure Predictions.

2. De novo search for non-coding RNA genes in the AT-rich genome of Dictyostelium discoideum: performance of Markov-dependent genome feature scoring.

3. Meeting report: a workshop on Best Practices in Genome Annotation.

4. Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.

5. Non-coding RNA detection methods combined to improve usability, reproducibility and precision.

6. Sensitive and label-free biosensing of RNA with predicted secondary structures by a triplex affinity capture method.

7. smyRNA: a novel Ab initio ncRNA gene finder.

8. Identification of ribosomal RNA genes in metagenomic fragments.

9. Non-coding RNA prediction and verification in Saccharomyces cerevisiae.

10. R-Coffee: a web server for accurately aligning noncoding RNA sequences.