Literature DB >> 17481903

Determining membrane protein structures: still a challenge!

Jean-Jacques Lacapère1, Eva Pebay-Peyroula, Jean-Michel Neumann, Catherine Etchebest.   

Abstract

Determination of structures and dynamics events of transmembrane proteins is important for the understanding of their function. Analysis of such events requires high-resolution 3D structures of the different conformations coupled with molecular dynamics analyses describing the conformational pathways. However, the solution of 3D structures of transmembrane proteins at atomic level remains a particular challenge for structural biochemists--the need for purified and functional transmembrane proteins causes a 'bottleneck'. There are various ways to obtain 3D structures: X-ray diffraction, electron microscopy, NMR and modelling; these methods are not used exclusively of each other, and the chosen combination depends on several criteria. Progress in this field will improve knowledge of ligand-induced activation and inhibition of membrane proteins in addition to aiding the design of membrane-protein-targeted drugs.

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Year:  2007        PMID: 17481903     DOI: 10.1016/j.tibs.2007.04.001

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  66 in total

1.  Pendant-bearing glucose-neopentyl glycol (P-GNG) amphiphiles for membrane protein manipulation: Importance of detergent pendant chain for protein stabilization.

Authors:  Hyoung Eun Bae; Cristina Cecchetti; Yang Du; Satoshi Katsube; Jonas S Mortensen; Weijiao Huang; Shahid Rehan; Ho Jin Lee; Claus J Loland; Lan Guan; Brian K Kobilka; Bernadette Byrne; Pil Seok Chae
Journal:  Acta Biomater       Date:  2020-06-06       Impact factor: 8.947

Review 2.  Vertebrate membrane proteins: structure, function, and insights from biophysical approaches.

Authors:  Daniel J Müller; Nan Wu; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2008-03-05       Impact factor: 25.468

Review 3.  TRP channels entering the structural era.

Authors:  Rachelle Gaudet
Journal:  J Physiol       Date:  2008-06-05       Impact factor: 5.182

4.  Backbone structure of transmembrane domain IX of the Na+/proline transporter PutP of Escherichia coli.

Authors:  Daniel Hilger; Yevhen Polyhach; Heinrich Jung; Gunnar Jeschke
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

5.  A green fluorescent protein screen for identification of well-expressed membrane proteins from a cohort of extremophilic organisms.

Authors:  Justus Hammon; Dinesh V Palanivelu; Joy Chen; Chintan Patel; Daniel L Minor
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

6.  Tandem facial amphiphiles for membrane protein stabilization.

Authors:  Pil Seok Chae; Kamil Gotfryd; Jennifer Pacyna; Larry J W Miercke; Søren G F Rasmussen; Rebecca A Robbins; Rohini R Rana; Claus J Loland; Brian Kobilka; Robert Stroud; Bernadette Byrne; Ulrik Gether; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2010-11-04       Impact factor: 15.419

Review 7.  SDSL-ESR-based protein structure characterization.

Authors:  Janez Strancar; Aleh Kavalenka; Iztok Urbancic; Ajasja Ljubetic; Marcus A Hemminga
Journal:  Eur Biophys J       Date:  2009-08-11       Impact factor: 1.733

8.  The impact of window functions on NMR-based paramagnetic relaxation enhancement measurements in membrane proteins.

Authors:  Wade D Van Horn; Andrew J Beel; Congbao Kang; Charles R Sanders
Journal:  Biochim Biophys Acta       Date:  2009-09-12

9.  Differentiating amino acid residues and side chain orientations in peptides using scanning tunneling microscopy.

Authors:  Shelley A Claridge; John C Thomas; Miles A Silverman; Jeffrey J Schwartz; Yanlian Yang; Chen Wang; Paul S Weiss
Journal:  J Am Chem Soc       Date:  2013-12-02       Impact factor: 15.419

10.  Pulsed EPR determination of water accessibility to spin-labeled amino acid residues in LHCIIb.

Authors:  A Volkov; C Dockter; T Bund; H Paulsen; G Jeschke
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

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