Literature DB >> 17462634

Extensive selection for the enrichment of G4 DNA motifs in transcriptional regulatory regions of warm blooded animals.

Yiqiang Zhao1, Zhuo Du, Ning Li.   

Abstract

A comprehensive analysis of potential G4 DNA motifs (G4Ms) in genomic regions flanking transcription start sites (TSS) was performed across 13 animal species. We found that G4Ms are significantly enriched in the transcriptional regulatory regions (TRRs) of warm-blooded animals. Further analysis of human genes in different temporal groups reveals that the enrichment is not specific to genes found only in warm-blooded species but instead exist in a wide range of genes. Our findings therefore suggest that the high prevalence of G4Ms in TRRs is extensively selected in warm-blooded animals, supporting the hypothesis that G4Ms are involved in the regulation of gene transcription.

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Year:  2007        PMID: 17462634     DOI: 10.1016/j.febslet.2007.04.017

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  34 in total

1.  Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription.

Authors:  Zhuo Du; Yiqiang Zhao; Ning Li
Journal:  Genome Res       Date:  2007-12-20       Impact factor: 9.043

Review 2.  Non-B DNA structure-induced genetic instability and evolution.

Authors:  Junhua Zhao; Albino Bacolla; Guliang Wang; Karen M Vasquez
Journal:  Cell Mol Life Sci       Date:  2009-09-01       Impact factor: 9.261

3.  Evidence of genome-wide G4 DNA-mediated gene expression in human cancer cells.

Authors:  Anjali Verma; Vinod Kumar Yadav; Richa Basundra; Akinchan Kumar; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2009-02-11       Impact factor: 16.971

4.  Loop and backbone modifications of peptide nucleic acid improve g-quadruplex binding selectivity.

Authors:  Sabrina Lusvarghi; Connor T Murphy; Subhadeep Roy; Farial A Tanious; Iulia Sacui; W David Wilson; Danith H Ly; Bruce A Armitage
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

5.  Strand invasion of DNA quadruplexes by PNA: comparison of homologous and complementary hybridization.

Authors:  Anisha Gupta; Ling-Ling Lee; Subhadeep Roy; Farial A Tanious; W David Wilson; Danith H Ly; Bruce A Armitage
Journal:  Chembiochem       Date:  2013-07-19       Impact factor: 3.164

6.  Genome-wide colonization of gene regulatory elements by G4 DNA motifs.

Authors:  Zhuo Du; Yiqiang Zhao; Ning Li
Journal:  Nucleic Acids Res       Date:  2009-09-16       Impact factor: 16.971

7.  The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts.

Authors:  Sigve Nakken; Torbjørn Rognes; Eivind Hovig
Journal:  Nucleic Acids Res       Date:  2009-07-17       Impact factor: 16.971

8.  Predictable suppression of gene expression by 5'-UTR-based RNA quadruplexes.

Authors:  Kangkan Halder; Markus Wieland; Jörg S Hartig
Journal:  Nucleic Acids Res       Date:  2009-09-09       Impact factor: 16.971

9.  Genome-wide analyses of recombination prone regions predict role of DNA structural motif in recombination.

Authors:  Prithvi Mani; Vinod Kumar Yadav; Swapan Kumar Das; Shantanu Chowdhury
Journal:  PLoS One       Date:  2009-02-09       Impact factor: 3.240

10.  Metastases suppressor NM23-H2 interaction with G-quadruplex DNA within c-MYC promoter nuclease hypersensitive element induces c-MYC expression.

Authors:  Ram Krishna Thakur; Praveen Kumar; Kangkan Halder; Anjali Verma; Anirban Kar; Jean-Luc Parent; Richa Basundra; Akinchan Kumar; Shantanu Chowdhury
Journal:  Nucleic Acids Res       Date:  2008-11-25       Impact factor: 16.971

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