Literature DB >> 17461619

Density functional self-consistent quantum mechanics/molecular mechanics theory for linear and nonlinear molecular properties: Applications to solvated water and formaldehyde.

Christian B Nielsen1, Ove Christiansen, Kurt V Mikkelsen, Jacob Kongsted.   

Abstract

A combined quantum mechanics/molecular mechanics (QM/MM) method is described, where the polarization between the solvent and solute is accounted for using a self-consistent scheme linear in the solvent polarization. The QM/MM method is implemented for calculation of energies and molecular response properties including the calculation of linear and quadratic response functions using the density-functional theory (DFT) and the Hartree-Fock (HF) theory. Sample calculations presented for ground-state energies, first-order ground-state properties, excitation energies, first-order excited state properties, polarizabilities, first-hyperpolarizabilities, and two-photon absorptions strengths of formaldehyde suggests that DFT may in some cases be a sufficiently reliable alternative to high-level theory, such as coupled-cluster (CC) theory, in modeling solvent shifts, whereas results obtained with the HF wave function deviate significantly from the CC results. Calculations carried out on water gives results that also are comparable with CC calculations in accuracy for ground-state and first-order properties. However, to obtain such accuracy an exchange-correlation functional capable of describing the diffuse Rydberg states must be chosen.

Entities:  

Year:  2007        PMID: 17461619     DOI: 10.1063/1.2711182

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  11 in total

1.  Breakdown of the first hyperpolarizability/bond-length alternation parameter relationship.

Authors:  N Arul Murugan; Jacob Kongsted; Zilvinas Rinkevicius; Hans Agren
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-07       Impact factor: 11.205

2.  LICHEM: A QM/MM program for simulations with multipolar and polarizable force fields.

Authors:  Eric G Kratz; Alice R Walker; Louis Lagardère; Filippo Lipparini; Jean-Philip Piquemal; G Andrés Cisneros
Journal:  J Comput Chem       Date:  2016-01-18       Impact factor: 3.376

3.  Reduction of the virtual space for coupled-cluster excitation energies of large molecules and embedded systems.

Authors:  Robert Send; Ville R I Kaila; Dage Sundholm
Journal:  J Chem Phys       Date:  2011-06-07       Impact factor: 3.488

4.  Scalable Evaluation of Polarization Energy and Associated Forces in Polarizable Molecular Dynamics: II.Towards Massively Parallel Computations using Smooth Particle Mesh Ewald.

Authors:  Louis Lagardère; Filippo Lipparini; Étienne Polack; Benjamin Stamm; Éric Cancès; Michael Schnieders; Pengyu Ren; Yvon Maday; Jean-Philip Piquemal
Journal:  J Chem Theory Comput       Date:  2014-02-28       Impact factor: 6.006

5.  A Many-Body, Fully Polarizable Approach to QM/MM Simulations.

Authors:  Eleftherios Lambros; Filippo Lipparini; Gerardo Andrés Cisneros; Francesco Paesani
Journal:  J Chem Theory Comput       Date:  2020-11-19       Impact factor: 6.006

6.  Interfacing ab initio Quantum Mechanical Method with Classical Drude Osillator Polarizable Model for Molecular Dynamics Simulation of Chemical Reactions.

Authors:  Zhenyu Lu; Yingkai Zhang
Journal:  J Chem Theory Comput       Date:  2008       Impact factor: 6.006

7.  Analytical gradients for MP2, double hybrid functionals, and TD-DFT with polarizable embedding described by fluctuating charges.

Authors:  Ivan Carnimeo; Chiara Cappelli; Vincenzo Barone
Journal:  J Comput Chem       Date:  2015-09-24       Impact factor: 3.376

8.  Electronic absorption spectra of pyridine and nicotine in aqueous solution with a combined molecular dynamics and polarizable QM/MM approach.

Authors:  Marco Pagliai; Giordano Mancini; Ivan Carnimeo; Nicola De Mitri; Vincenzo Barone
Journal:  J Comput Chem       Date:  2016-12-02       Impact factor: 3.376

9.  Nonempirical Simulations of Inhomogeneous Broadening of Electronic Transitions in Solution: Predicting Band Shapes in One- and Two-Photon Absorption Spectra of Chalcones.

Authors:  Joanna Bednarska; Robert Zaleśny; Guangjun Tian; Natarajan Arul Murugan; Hans Ågren; Wojciech Bartkowiak
Journal:  Molecules       Date:  2017-09-30       Impact factor: 4.411

10.  Calculation of Linear and Non-linear Electric Response Properties of Systems in Aqueous Solution: A Polarizable Quantum/Classical Approach with Quantum Repulsion Effects.

Authors:  Gioia Marrazzini; Tommaso Giovannini; Franco Egidi; Chiara Cappelli
Journal:  J Chem Theory Comput       Date:  2020-10-15       Impact factor: 6.006

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