Literature DB >> 17457614

Extreme individual marker F(ST )values do not imply population-specific selection in humans: the NRG1 example.

Michelle Gardner1, Scott Williamson, Ferran Casals, Elena Bosch, Arcadi Navarro, Francesc Calafell, Jaume Bertranpetit, David Comas.   

Abstract

Extreme population differentiation, as measured by the F(ST) value, has been suggested as an indicator of recent population-specific positive selection. Elevated F(ST) values indicating high differentiation between continental groups were previously reported on a linkage disequilibrium region in the Neuregulin 1 gene, a gene which has been associated to schizophrenia. In the present study we show evidence that high F(ST) values may not necessarily imply the action of selection, in particular positive selection, neither globally nor regionally, using the example of the NRG1 gene.

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Year:  2007        PMID: 17457614     DOI: 10.1007/s00439-007-0364-9

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   5.881


  6 in total

1.  ALFRED: a Web-accessible allele frequency database.

Authors:  K H Cheung; P L Miller; J R Kidd; K K Kidd; M V Osier; A J Pakstis
Journal:  Pac Symp Biocomput       Date:  2000

2.  A human genome diversity cell line panel.

Authors:  Howard M Cann; Claudia de Toma; Lucien Cazes; Marie-Fernande Legrand; Valerie Morel; Laurence Piouffre; Julia Bodmer; Walter F Bodmer; Batsheva Bonne-Tamir; Anne Cambon-Thomsen; Zhu Chen; J Chu; Carlo Carcassi; Licinio Contu; Ruofu Du; Laurent Excoffier; G B Ferrara; Jonathan S Friedlaender; Helena Groot; David Gurwitz; Trefor Jenkins; Rene J Herrera; Xiaoyi Huang; Judith Kidd; Kenneth K Kidd; Andre Langaney; Alice A Lin; S Qasim Mehdi; Peter Parham; Alberto Piazza; Maria Pia Pistillo; Yaping Qian; Qunfang Shu; Jiujin Xu; S Zhu; James L Weber; Henry T Greely; Marcus W Feldman; Gilles Thomas; Jean Dausset; L Luca Cavalli-Sforza
Journal:  Science       Date:  2002-04-12       Impact factor: 47.728

3.  Searching for signals of evolutionary selection in 168 genes related to immune function.

Authors:  Emily C Walsh; Pardis Sabeti; Holli B Hutcheson; Ben Fry; Stephen F Schaffner; Paul I W de Bakker; Patrick Varilly; Alejandro A Palma; Jessica Roy; Richard Cooper; Cheryl Winkler; Yi Zeng; Guy de The; Eric S Lander; Stephen O'Brien; David Altshuler
Journal:  Hum Genet       Date:  2005-12-14       Impact factor: 4.132

4.  Extreme population differences across Neuregulin 1 gene, with implications for association studies.

Authors:  M Gardner; A González-Neira; O Lao; F Calafell; J Bertranpetit; D Comas
Journal:  Mol Psychiatry       Date:  2006-01       Impact factor: 15.992

Review 5.  Positive natural selection in the human lineage.

Authors:  P C Sabeti; S F Schaffner; B Fry; J Lohmueller; P Varilly; O Shamovsky; A Palma; T S Mikkelsen; D Altshuler; E S Lander
Journal:  Science       Date:  2006-06-16       Impact factor: 47.728

6.  A map of recent positive selection in the human genome.

Authors:  Benjamin F Voight; Sridhar Kudaravalli; Xiaoquan Wen; Jonathan K Pritchard
Journal:  PLoS Biol       Date:  2006-03-07       Impact factor: 8.029

  6 in total
  14 in total

1.  Natural selection at genomic regions associated with obesity and type-2 diabetes: East Asians and sub-Saharan Africans exhibit high levels of differentiation at type-2 diabetes regions.

Authors:  Yann C Klimentidis; Marshall Abrams; Jelai Wang; Jose R Fernandez; David B Allison
Journal:  Hum Genet       Date:  2010-12-28       Impact factor: 4.132

2.  Copy number variation analysis in the great apes reveals species-specific patterns of structural variation.

Authors:  Elodie Gazave; Fleur Darré; Carlos Morcillo-Suarez; Natalia Petit-Marty; Angel Carreño; Urko M Marigorta; Oliver A Ryder; Antoine Blancher; Mariano Rocchi; Elena Bosch; Carl Baker; Tomàs Marquès-Bonet; Evan E Eichler; Arcadi Navarro
Journal:  Genome Res       Date:  2011-08-08       Impact factor: 9.043

3.  Adaptive evolution of UGT2B17 copy-number variation.

Authors:  Yali Xue; Donglin Sun; Allan Daly; Fengtang Yang; Xue Zhou; Mengyao Zhao; Ni Huang; Tatiana Zerjal; Charles Lee; Nigel P Carter; Matthew E Hurles; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2008-08-28       Impact factor: 11.025

4.  Adaptive evolution of genes underlying schizophrenia.

Authors:  Bernard Crespi; Kyle Summers; Steve Dorus
Journal:  Proc Biol Sci       Date:  2007-11-22       Impact factor: 5.349

5.  Population differentiation as an indicator of recent positive selection in humans: an empirical evaluation.

Authors:  Yali Xue; Xuelong Zhang; Ni Huang; Allan Daly; Christopher J Gillson; Daniel G Macarthur; Bryndis Yngvadottir; Alexandra C Nica; Cara Woodwark; Yuan Chen; Donald F Conrad; Qasim Ayub; S Qasim Mehdi; Pu Li; Chris Tyler-Smith
Journal:  Genetics       Date:  2009-09-07       Impact factor: 4.562

6.  Sequence diversity of the Rh blood group system in Basques.

Authors:  André Flores-Bello; David Mas-Ponte; Miruna E Rosu; Elena Bosch; Francesc Calafell; David Comas
Journal:  Eur J Hum Genet       Date:  2018-08-08       Impact factor: 4.246

7.  Evolutionary analysis of genes of two pathways involved in placental malaria infection.

Authors:  Martin Sikora; Anna Ferrer-Admetlla; Alfredo Mayor; Jaume Bertranpetit; Ferran Casals
Journal:  Hum Genet       Date:  2008-03-04       Impact factor: 4.132

8.  Natural selection among Eurasians at genomic regions associated with HIV-1 control.

Authors:  Yann C Klimentidis; Brahim Aissani; Mark D Shriver; David B Allison; Sadeep Shrestha
Journal:  BMC Evol Biol       Date:  2011-06-20       Impact factor: 3.260

9.  Inter-chromosomal variation in the pattern of human population genetic structure.

Authors:  Tesfaye M Baye
Journal:  Hum Genomics       Date:  2011-05       Impact factor: 4.639

10.  Empirical distributions of F(ST) from large-scale human polymorphism data.

Authors:  Eran Elhaik
Journal:  PLoS One       Date:  2012-11-21       Impact factor: 3.240

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