Literature DB >> 17450624

Minimalist active-site redesign: teaching old enzymes new tricks.

Miguel D Toscano1, Kenneth J Woycechowsky, Donald Hilvert.   

Abstract

Although nature evolves its catalysts over millions of years, enzyme engineers try to do it a bit faster. Enzyme active sites provide highly optimized microenvironments for the catalysis of biologically useful chemical transformations. Consequently, changes at these centers can have large effects on enzyme activity. The prediction and control of these effects provides a promising way to access new functions. The development of methods and strategies to explore the untapped catalytic potential of natural enzyme scaffolds has been pushed by the increasing demand for industrial biocatalysts. This Review describes the use of minimal modifications at enzyme active sites to expand their catalytic repertoires, including targeted mutagenesis and the addition of new reactive functionalities. Often, a novel activity can be obtained with only a single point mutation. The many successful examples of active-site engineering through minimal mutations give useful insights into enzyme evolution and open new avenues in biocatalyst research.

Mesh:

Substances:

Year:  2007        PMID: 17450624     DOI: 10.1002/anie.200604205

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  56 in total

1.  Exploring challenges in rational enzyme design by simulating the catalysis in artificial kemp eliminase.

Authors:  Maria P Frushicheva; Jie Cao; Zhen T Chu; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-09       Impact factor: 11.205

2.  Protein thermostability calculations using alchemical free energy simulations.

Authors:  Daniel Seeliger; Bert L de Groot
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis.

Authors:  Sagar D Khare; Yakov Kipnis; Per Greisen; Ryo Takeuchi; Yacov Ashani; Moshe Goldsmith; Yifan Song; Jasmine L Gallaher; Israel Silman; Haim Leader; Joel L Sussman; Barry L Stoddard; Dan S Tawfik; David Baker
Journal:  Nat Chem Biol       Date:  2012-02-05       Impact factor: 15.040

4.  A fast loop-closure algorithm to accelerate residue matching in computational enzyme design.

Authors:  Jing Xue; Xiaoqiang Huang; Min Lin; Yushan Zhu
Journal:  J Mol Model       Date:  2016-01-29       Impact factor: 1.810

5.  Saturation mutagenesis of Asn152 reveals a substrate selectivity switch in P99 cephalosporinase.

Authors:  Scott T Lefurgy; René M de Jong; Virginia W Cornish
Journal:  Protein Sci       Date:  2007-12       Impact factor: 6.725

6.  Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds.

Authors:  Jörg Claren; Christoph Malisi; Birte Höcker; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

7.  An engineered protease that cleaves specifically after sulfated tyrosine.

Authors:  Navin Varadarajan; George Georgiou; Brent L Iverson
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

8.  Inhibition of the Protein Phosphatase CppA Alters Development of Chlamydia trachomatis.

Authors:  Ja E Claywell; Lea M Matschke; Kyle N Plunkett; Derek J Fisher
Journal:  J Bacteriol       Date:  2018-09-10       Impact factor: 3.490

Review 9.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

10.  Mechanistic insights into the bifunctional non-heme iron oxygenase carbapenem synthase by active site saturation mutagenesis.

Authors:  Ryan M Phelan; Craig A Townsend
Journal:  J Am Chem Soc       Date:  2013-05-13       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.