Literature DB >> 17448663

eMovie: a storyboard-based tool for making molecular movies.

Eran Hodis1, Gideon Schreiber, Kristian Rother, Joel L Sussman.   

Abstract

The 3D structures of macromolecules are difficult to grasp and also to communicate. By their nature, movies or animations are particularly useful for highlighting key features by offering a 'guided tour' of structures and conformation changes. However, high-quality movies are rarely seen because they are currently difficult and time consuming to make. By adopting the traditional movie 'storyboard' concept, which gives guidance and direction to filming, eMovie makes the creation of lengthy molecular animations much easier. This tool is a plug-in for the open-source molecular graphics program PyMOL, and enables experts and novices alike to produce informative and high-quality molecular animations.

Mesh:

Year:  2007        PMID: 17448663     DOI: 10.1016/j.tibs.2007.03.008

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  15 in total

1.  Orientation of SecA and SecB in complex, derived from disulfide cross-linking.

Authors:  Yuying Suo; Simon J S Hardy; Linda L Randall
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

2.  SecA, the motor of the secretion machine, binds diverse partners on one interactive surface.

Authors:  Dylan B Cooper; Virginia F Smith; Jennine M Crane; Hilary C Roth; Angela A Lilly; Linda L Randall
Journal:  J Mol Biol       Date:  2008-06-24       Impact factor: 5.469

3.  ATP hydrolysis in Eg5 kinesin involves a catalytic two-water mechanism.

Authors:  Courtney L Parke; Edward J Wojcik; Sunyoung Kim; David K Worthylake
Journal:  J Biol Chem       Date:  2009-12-15       Impact factor: 5.157

4.  A toolbox for developing bioinformatics software.

Authors:  Kristian Rother; Wojciech Potrzebowski; Tomasz Puton; Magdalena Rother; Ewa Wywial; Janusz M Bujnicki
Journal:  Brief Bioinform       Date:  2011-07-29       Impact factor: 11.622

5.  Shortcuts for faster image creation in PyMOL.

Authors:  Blaine H M Mooers
Journal:  Protein Sci       Date:  2019-11-27       Impact factor: 6.725

6.  ePMV embeds molecular modeling into professional animation software environments.

Authors:  Graham T Johnson; Ludovic Autin; David S Goodsell; Michel F Sanner; Arthur J Olson
Journal:  Structure       Date:  2011-03-09       Impact factor: 5.006

7.  Ligand docking and binding site analysis with PyMOL and Autodock/Vina.

Authors:  Daniel Seeliger; Bert L de Groot
Journal:  J Comput Aided Mol Des       Date:  2010-04-17       Impact factor: 3.686

8.  Human Siglec-10 can bind to vascular adhesion protein-1 and serves as its substrate.

Authors:  Elina Kivi; Kati Elima; Kristiina Aalto; Yvonne Nymalm; Kaisa Auvinen; Erkki Koivunen; Diana M Otto; Paul R Crocker; Tiina A Salminen; Marko Salmi; Sirpa Jalkanen
Journal:  Blood       Date:  2009-10-27       Impact factor: 22.113

9.  Conformational changes in IgE contribute to its uniquely slow dissociation rate from receptor FcɛRI.

Authors:  Mary D Holdom; Anna M Davies; Joanne E Nettleship; Sarah C Bagby; Balvinder Dhaliwal; Enrico Girardi; James Hunt; Hannah J Gould; Andrew J Beavil; James M McDonnell; Ray J Owens; Brian J Sutton
Journal:  Nat Struct Mol Biol       Date:  2011-04-24       Impact factor: 15.369

10.  SGC--structural biology and human health: a new approach to publishing structural biology results.

Authors:  Wen Hwa Lee; Julián Atienza-Herrero; Ruben Abagyan; Brian D Marsden
Journal:  PLoS One       Date:  2009-10-20       Impact factor: 3.240

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