Literature DB >> 17448461

Transgenic analysis of Hoxd gene regulation during digit development.

Federico Gonzalez1, Denis Duboule, François Spitz.   

Abstract

In tetrapods, posterior Hoxd genes (from groups 10 to 13) are necessary to properly pattern the developing autopods, including the number and identities of digits. Their coordinated expression is achieved by sharing a global control region (GCR), which was isolated and localized 200 kb 5' (centromeric) of the gene cluster. However, in transgenic assays, the GCR was unable to fully recapitulate all aspects of the endogenous Hoxd expression patterns during distal limb development. In this paper, we further analyze the regulatory potential of this locus and report the characterization of Prox, a second enhancer element that contributes to the transcriptional activity of posterior Hoxd genes in developing distal limb buds. We show that the GCR and Prox elements complement each other and work in combination to correctly establish the late phase of Hoxd genes expression. Based on DNA sequence conservation and transgenic assays, we discuss the functions of these regulatory regions as well as a potential evolutionary scheme accounting for their emergence along with the evolution of tetrapod limbs.

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Year:  2007        PMID: 17448461     DOI: 10.1016/j.ydbio.2007.03.020

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  35 in total

1.  A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation.

Authors:  Rafael D Acemel; Juan J Tena; Ibai Irastorza-Azcarate; Ferdinand Marlétaz; Carlos Gómez-Marín; Elisa de la Calle-Mustienes; Stéphanie Bertrand; Sergio G Diaz; Daniel Aldea; Jean-Marc Aury; Sophie Mangenot; Peter W H Holland; Damien P Devos; Ignacio Maeso; Hector Escrivá; José Luis Gómez-Skarmeta
Journal:  Nat Genet       Date:  2016-02-01       Impact factor: 38.330

2.  Modeling Hox gene regulation in digits: reverse collinearity and the molecular origin of thumbness.

Authors:  Thomas Montavon; Jean-François Le Garrec; Michel Kerszberg; Denis Duboule
Journal:  Genes Dev       Date:  2008-02-01       Impact factor: 11.361

3.  Tailored Hox gene transcription and the making of the thumb.

Authors:  Jacqueline Deschamps
Journal:  Genes Dev       Date:  2008-02-01       Impact factor: 11.361

4.  The genomic landscape of cohesin-associated chromatin interactions.

Authors:  Laura E DeMare; Jing Leng; Justin Cotney; Steven K Reilly; Jun Yin; Richard Sarro; James P Noonan
Journal:  Genome Res       Date:  2013-05-23       Impact factor: 9.043

5.  Reshuffling genomic landscapes to study the regulatory evolution of Hox gene clusters.

Authors:  Patrick Tschopp; Nadine Fraudeau; Frédérique Béna; Denis Duboule
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-13       Impact factor: 11.205

6.  Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature.

Authors:  Igor Schneider; Ivy Aneas; Andrew R Gehrke; Randall D Dahn; Marcelo A Nobrega; Neil H Shubin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-15       Impact factor: 11.205

Review 7.  Transcription factors: from enhancer binding to developmental control.

Authors:  François Spitz; Eileen E M Furlong
Journal:  Nat Rev Genet       Date:  2012-08-07       Impact factor: 53.242

Review 8.  Disruption of long-range gene regulation in human genetic disease: a kaleidoscope of general principles, diverse mechanisms and unique phenotypic consequences.

Authors:  Shipra Bhatia; Dirk A Kleinjan
Journal:  Hum Genet       Date:  2014-02-05       Impact factor: 4.132

9.  Quantitative modeling of a gene's expression from its intergenic sequence.

Authors:  Md Abul Hassan Samee; Saurabh Sinha
Journal:  PLoS Comput Biol       Date:  2014-03-06       Impact factor: 4.475

10.  Uncoupling time and space in the collinear regulation of Hox genes.

Authors:  Patrick Tschopp; Basile Tarchini; François Spitz; Jozsef Zakany; Denis Duboule
Journal:  PLoS Genet       Date:  2009-03-06       Impact factor: 5.917

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