Literature DB >> 17447761

Metal-ion selectivity produced by C-alkyl substituents on the bridges of chelating ligands: the importance of short H-H nonbonded van der Waals contacts in controlling metal-ion selectivity. A thermodynamic, molecular mechanics, and crystallographic study.

Robert D Hancock1, Alvaro S de Sousa, George B Walton, Joseph H Reibenspies.   

Abstract

The effect on metal-ion selectivity of the use of cyclohexenyl bridges in ligands in place of ethylene bridges is examined (selectivity is defined as the difference in log K1 for one metal ion relative to that of another with the same ligand). The syntheses of N,N'-bis(2-hydroxycyclohexyl)ethane-1,2-diamine (Cy2-en), N,N'-bis(2-hydroxycyclohexyl)propane-1,3-diamine (Cy2-tn), and 1,7-bis(2-hydroxycyclohexyl)-1,4,7-triazaheptane (Cy2-dien) are reported. The crystal structures of [Cu(Cy2-tn)(H2O)](ClO4)2 (1) and [Cu(Cy2-dien)](ClO4)2 (2) are reported. Characteristics of 1: monoclinic, Pn space group, a=11.627(2) A, b=7.8950(10) A, c=12.737(8) A, beta=98.15(3) degrees, Z=2, R=0.0524. Characteristics of 2: orthorhombic, Pbca space group, a=21.815(16) A, b=8.525(7) A, c=25.404(14) A, Z=8, R=0.0821. Structure 1 has the Cu(II) atom coordinated in the plane of the ligand to the two N donors and two O donors, with a long bond to an axially coordinated water molecule. 2 has three N donors, and one hydroxyl O donor from the ligand is coordinated in the plane around the Cu(II) atom, with the second hydroxyl O donor of the ligand occupying an axial site with a long Cu-O bond. The salient feature of both structures is the short H-H nonbonded distance between H atoms on the cyclohexenyl bridges and H atoms on the ethylene bridges of the ligand. These short contacts are important in explaining the metal-ion selectivities of these ligands. Formation constants, determined by glass-electrode potentiometry, for the Cy2-en (Cu(II), Ni(II), Zn(II), Cd(II), Pb(II)), Cy2-dien (Cu(II), Zn(II), Cd(II), Pb(II)), and Cy2-tn (Cu(II), Zn(II), Cd(II)) complexes are reported. These all show a strong shift in selectivity toward smaller metal ions compared with the analogous ligands, where ethylene bridges are present in place of the cyclohexenyl bridges of the ligands studied here. Molecular mechanics (MM) calculations are used to analyze these changes in selectivity. These calculations show that the short H-H contacts become shorter with increasing metal-ion size, which is suggested as the cause of the shift in the selectivity of ligands in favor of smaller metal ions when ethylene bridges are replaced with cyclohexenyl bridges. MM calculations are also used to rationalize, in terms of short H-H contacts, the fact that when the chelate ring contains two neutral O donors, more stable complexes result with cis placement of the donor atoms on the cyclohexenyl bridge, but with two N donors, trans placement of the donor atoms results in more stable complexes.

Entities:  

Year:  2007        PMID: 17447761     DOI: 10.1021/ic070239h

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  2 in total

1.  QSPR ensemble modelling of the 1:1 and 1:2 complexation of Co²⁺, Ni²⁺, and Cu²⁺ with organic ligands: relationships between stability constants.

Authors:  Vitaly Solov'ev; Alexandre Varnek; Aslan Tsivadze
Journal:  J Comput Aided Mol Des       Date:  2014-04-16       Impact factor: 3.686

2.  Machine learning-based analysis of overall stability constants of metal-ligand complexes.

Authors:  Kaito Kanahashi; Makoto Urushihara; Kenji Yamaguchi
Journal:  Sci Rep       Date:  2022-07-25       Impact factor: 4.996

  2 in total

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